Array 1 6587-5227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJPY01000017.1 Listeria monocytogenes strain BCW_4283 PROKKA_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6586 36 100.0 30 .................................... ACGTATTTTGAAATCTGGATGGCATTTTCA 6520 36 100.0 30 .................................... TCCGCTTAGCCGATGAAATTCCAAGCAATA 6454 36 100.0 30 .................................... TTTATTCACCGGACAAGAAACGACCTCGTC 6388 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 6322 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 6256 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 6190 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 6124 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 6057 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 5991 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 5925 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 5859 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 5793 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 5727 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 5661 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 5595 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5529 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5463 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5397 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5331 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5265 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5230,5233,5238] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //