Array 1 2309202-2310838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006872.1 Paenibacillus polymyxa SQR-21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2309202 32 100.0 36 ................................ GATTTCCCATAAAACCTTTTGTTTAAGGTTAATGCC 2309270 32 100.0 34 ................................ TATTAAAAGAAACGGCCCTCTGATCGTGGGGATC 2309336 32 100.0 37 ................................ ACGTCCAACAGGACGATTATCAAAGCGTTTTGGAACG 2309405 32 100.0 37 ................................ TAGGCCTTGGTTTCTGTATTTTCAACGAACCGGAACA 2309474 32 100.0 33 ................................ TACCTAACTGGGAGAAGCATCAAAATGTAGATG 2309539 32 100.0 34 ................................ TTAATGAGTATCAGCATTTACTGTTTGATGCGAC 2309605 32 100.0 36 ................................ ATAACACAAACAACAAAAGACTGGTCTTTAATAGAC 2309673 32 100.0 34 ................................ TACAGAATAAAGCGCAGGCAGGCGTTCAACTAAA 2309739 32 100.0 33 ................................ CAGTTTTCGATGGCTATTAGATCGCCCTCAAAA 2309804 32 100.0 36 ................................ ATAACACAAACAACAAAAGACTGGTCTTTAATAGAC 2309872 32 100.0 34 ................................ TACAGAATAAAGCGCAGGCAGGCGTTCAACTAAA 2309938 32 100.0 33 ................................ CAGTTTTCGATGGCTATTAGATCGCCCTCAAAA 2310003 32 100.0 33 ................................ GTAATGTCCGTAGAAATGCCTGACGCGCGCGCA 2310068 32 100.0 36 ................................ AATTTATCTCCCTTGATTACAGGAAAAAAAATCCAA 2310136 32 100.0 35 ................................ CGTTTACGAGTCTCGTGGAGTCAGAACATTATAAC 2310203 32 100.0 34 ................................ ATGAGCGTATCCGTGGCCTTAATTGACTCGTTGA 2310269 32 100.0 37 ................................ TGCTGTACTTGTAGCAACTTGAGATTGTCTAATAATC 2310338 32 96.9 34 ............................G... CCGAAACAAAGGAAAAATACTCAAAATTCATTGA 2310404 32 100.0 35 ................................ TTTTACCAACTGACAAGGGTATCTCTCCTTTATAA 2310471 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 2310539 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 2310607 32 100.0 36 ................................ TCTCTTGTTGTTTGGTTTATTGCCAGGTGTACCAGG 2310675 32 96.9 34 ....................A........... AACTAAATAAACAACAAAGGACTCCATACTGGTT 2310741 32 100.0 34 ................................ TAAAATTTTTGGAAAAGGGTAGGGGGCTCAAATT 2310807 32 93.8 0 .......................A...A.... | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 99.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTGGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAGATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCT # Right flank : TTATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATGAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2319951-2321680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006872.1 Paenibacillus polymyxa SQR-21 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2319951 33 100.0 34 ................................. TGATGGAGACGATCAGGTTAAATCCAAATTGGTC 2320018 33 100.0 34 ................................. GTCGTTCGGCTCAGGATCTACTGGCCCCCAAATA 2320085 33 100.0 34 ................................. ACAATGGCGACTATGATTTTACCGATCATATAGA 2320152 33 100.0 36 ................................. TGATTGAGCTTTTTTCTAATCTCTCGCTGCATGTGC 2320221 33 100.0 35 ................................. CAGGTGCCTGACGGTGGTTTCGAGGTGACTATACC 2320289 33 100.0 33 ................................. CAATACCGAAATGATAGGGGGTGGTCAACACGA 2320355 33 100.0 35 ................................. TTGTCATTCGGCGTAGCTTTCAGGTTTTTAATTAC 2320423 33 100.0 37 ................................. CTGATCGTACGTGTAACTTGCCGGAAGCTCTGAGGGA 2320493 33 100.0 34 ................................. CGTCTGGCTGCTCAAATTTAACGATCTGAGAATG 2320560 33 100.0 35 ................................. GGACATCATCCCGGAGTAATACAAACAACCCCCGC 2320628 33 100.0 34 ................................. GACTTCGAAAATGCCCATTGCTGGCTGCTTACGA 2320695 33 100.0 35 ................................. TTGTTAAATAAAATAGTTGAGGAGGTTTTATGATG 2320763 33 100.0 33 ................................. CATGAAAAACCTTTCACGGCCTGTCGGTGCTCC 2320829 33 100.0 36 ................................. TTATGCTGAACAGGACTCATGGCGGTTAGATACTTA 2320898 33 100.0 34 ................................. TGCCCGTCTCAGGGCCTCTACAGCGGTTTCCTTA 2320965 33 100.0 37 ................................. CATCCCAAAATAACAGATTTGCTATCAACCCTTCGTG 2321035 33 100.0 35 ................................. TTTTACTTGGTCAGAAGGATAACCGTTTGTATATC 2321103 33 100.0 35 ................................. CGGTACCTACATACTTATCCGTACTCTTCCAATCG 2321171 33 100.0 34 ................................. AATGACATTGCCGCTATAAAAAGTTCCCGTTTTA 2321238 33 100.0 37 ................................. TTGAATCCTCTATCCAAGGTGAAGAATGTTCCGAAGC 2321308 33 100.0 34 ................................. GAGCATAACGGAACGTCCTACACGTTGCAATTCC 2321375 33 100.0 38 ................................. AACTTGTTGTACTCTTCTCTCGCCATCCGTTACACCTG 2321446 33 100.0 35 ................................. AAAGCCCCCTGCATGAGCTGTCCTGCATCCATTCT 2321514 33 100.0 35 ................................. ATCGACATGACGAATATAACAAGCATTAGTATATT 2321582 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 2321649 32 87.9 0 ..........A...-.........A...A.... | ========== ====== ====== ====== ================================= ====================================== ================== 26 33 99.5 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTCGCT # Right flank : TATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTCCATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //