Array 1 13934-13049 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNJ01000012.1 Corynebacterium bovis strain MI 82-1021 12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 13933 29 100.0 32 ............................. GGCTGGCACGGGTAACCACCGGTGAGAATGTC 13872 29 100.0 32 ............................. ACAGCCCCGCTCGAGTCATGGCGGACGTACGC 13811 29 96.6 32 ............................G CGGCTGTGCATGACGTCAATCGCTGCGTTCAT 13750 29 96.6 32 ........................G.... ATCTGGGACGTCGCCGCCCGCAGATCATTCGT 13689 29 93.1 32 .............CG.............. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG 13628 29 93.1 32 ............C...............T GCTTCGTTGAGTGTCGGTCCGGCAGGTGCCTG 13567 29 100.0 32 ............................. GTGGGCGTCCGGTCGGCACTGTCGACGACGGG 13506 29 96.6 32 ............................G CAATGGCAGCGGGTAGTGAAGTCGGGGGTTGA 13445 29 96.6 32 ......................G...... GCGTCCGAGTGGGCGCGCCTCGACTCGGATTT 13384 29 93.1 32 ............C...............G CGTTGGTGGTGTCCTTCCTTGAGGGTGTTGTG 13323 29 89.7 46 ...............A.........G..G CGGGGATGATCCGCAGGTCATCGGCGCGCTGGTCGGTGGTGTCAAC 13248 28 86.2 82 ............C.........C..-..T GCGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGTAGGGAGGACGACCCGCTAGACTGCAGACACTG 13138 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 13077 28 93.1 0 ...........-................T | C [13063] ========== ====== ====== ====== ============================= ================================================================================== ================== 14 29 94.8 37 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCGGAAGACGGGGTTGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGGCTCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAGCGGGTGCGTGGTCACCTCACGCGATGGCTCTCGGAAGTGGCGACCGGAGTGTATGTCGGCAAGGTGAGTGCCAGAGTGCGGGACGAGCTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACGTACCCGACCACCATCTGCGAGCAGGGGTACGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGCCTGGTCCTGTTTCGTCGGCCGGGCCGTGACCGGACGTCGCGGACCCGCGGCGATTGGTCACGGGCCTCGCGGGAGCGCGACGGCAGGACCAGACGAGCGGATGATCTGCAGTGATGGTTGGTGCTGACGTGAGGGCGCTGATCGACATTGAATGAAATCTGGCTTCTCGTGTACTAACATCCCTGGTCAGGAAGT # Right flank : CACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCGCCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGCCTGTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGCCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGATTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGACGCCGCCG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : GTGCTCCCCGCGCGAGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //