Array 1 601287-601513 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000001.1 Actinomadura syzygii strain GKU157 NODE_1_length_859008_cov_52.519692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 601287 31 100.0 36 ............................... CGGGGGACTCTTTCGGGTCGTCCTTATCCCGGATGC 601354 31 100.0 34 ............................... ATGACCACTCGCTGGACGGCGGACGGTACGGCCT 601419 31 96.8 33 .............T................. TAGATCAGGACGGGGAGCACGGTCACGACCGTG 601483 31 90.3 0 A...............G...........C.. | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 96.8 35 GGTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : ACTCCCCGGCCCATTCCACGGCAGCCGGATCGACCTCGATCACGACGACTTTCCCACCGTCCCCCCGAAGCCGCTCGACAATGGCCCGCCCGACTCCACGTCCCCCACCGGTAACGACATACGACCGCCCCACAGCACCCACCTCCGATTCGGCAACCTCCCCATGATCGCCACTAATCTCATGATGAACGAGCCAACCGCCGCCCACACCGGTGTACCGCGCCGCGAAGCGCCAGGGCACCTTCTCGTACCTTCCCGACCAAATGCCGACACCGCGAAGACCGTCATCACACTTCTGGCCGCCCCTGGGAGACGGAAGCCTGACCCAAGACAGTGCGAGCGGCCGGACCGGTCTGAGACGCTACAGACGTGCCGGCCGTCGAGATCAACCTTGATCGTTTCAGCGGCACGCCGAGGTCTCGTGCAAAACCGGAGGTTCGCTGCAATCACACCCCATGGACGGCCACCTAGGCACCGTCCAGCCAGCGGCTTTACCATGG # Right flank : CCCGTAACGCGGCGCGGTCAGTGGCACGCGGGATTCGTGTTCTTATCGCCCTAGCGGGCGAGGCTGGTGGGGTGTGGGGCTTGTTCGGCGGACGTGTGCCTTTTGGGTGGGGGTCTTGGGGGTCGGTAGACTTTGGGATGCGGATGGTTCACTCGGGGACGAGTGTCGTAAGAGGGAACCCGGTGTGAGTCCGGGACTGCCCCGCAGCGGTTAGTGGGAACGACCGCCGTCATACGCACTGGGCCTCACGGCCTGGGAAGCGACGGCCAGTAGGAACGAGCACGGCGCCCGCGAGTCCGAAGACCTGCCTCCGCCCGTGCGCCAACTGGTGCGCGGTGGTCTGCGGCCTCGTGGGACGGTCGGCGGCGTCCGCTCCGCCGTGCGCTCCTCGGGGTCCGCCCGTGGCACAGCGAGGGAAGCCGCCATGAACACCACGATCCTCGGATACCCCCGAATCGGGGCGCGCCGGGAACTGAAATTCGCCACCGAGGACTACTGGG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 182582-179564 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000012.1 Actinomadura syzygii strain GKU157 NODE_12_length_438114_cov_50.029900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 182581 30 96.7 31 .............................A CCCTGCGCGGGTCCGTCTCCACGTCGCCGTG 182520 30 96.7 31 .............................A GCCCGCAGGGCTTGCCAGGCACGCAGGCCCC 182459 30 100.0 31 .............................. CGGGTATCGCGGCGGTCGCGTACATGGTGCG 182398 30 96.7 31 .............................A GCAGGAAGGGGAAGCCATGAAGCCCACACCG 182337 30 96.7 31 .............................T GCGCGATGCGCTTCCGGTCGGTCAGCTCTGT 182276 30 96.7 31 .............................T CAGCCGGATCGGTGACCCAGATCGGGCCGCT 182215 30 100.0 31 .............................. AGCCCGGTCCTGGTCCCGCCTCTACCGGGCC 182154 30 96.7 31 .............................C GTGGGTACCGTCTGCGCTGATCAGGACTTGC 182093 30 96.7 31 .............................T CGGTGCAGCGCAAGACGATCTCGCGGATGAC 182032 30 96.7 31 .............................C CCGTGATGCCCGCACCGGCGGGTTTGGGTTC 181971 30 100.0 31 .............................. GCGCACGGTCGTTCGCGCTGGTGTGGGGGAA 181910 30 96.7 31 .............................T GGGTGCAGGTCGTCGCGGACGCCCCGGTCGA 181849 30 96.7 29 .............................C ACGGCCCGCAACAAGAACACGGACGGCTC 181790 30 100.0 31 .............................. GCGTCCGGAGCTCAATGACGCGCTTGGGGAT 181729 30 96.7 31 .............................T GTTCCAGGGGTTCGGCAGAGAAGTCCGCGAA 181668 30 96.7 31 .............................C CCTGAAAGGAACCCCATGTTCGGCATGGACC 181607 30 100.0 31 .............................. TCGTAGGGGCCCATCTGGATGGACGAGCCGG 181546 30 96.7 32 .............................T TGACAATGACGAAACCCCCGGTCTCTGGGTGA 181484 30 100.0 31 .............................. GCGCGGCCTGCACTTTGGACCATGCCTCCCG 181423 30 96.7 31 .............................C GGGCGGGGAGCGCGTGCGTCTGGACGGGGCC 181362 30 100.0 31 .............................. ACGATGTCGGAGACCCGAAGGGTGAAGCCGT 181301 30 100.0 31 .............................. GCGAGGTCGCCATCCAGTCGCCCGACGTCGG 181240 30 93.3 31 ..T..........................A GACCGGCCCTCAAGGACTCGTTCGCTAGTCC 181179 30 96.7 31 .............................C TCGGGTGCTCGCTCCCCCAGCGTCAGGCTGA 181118 30 100.0 31 .............................. GTGGCCACAGTGTTCCTGCTGTGGGGAGCCG 181057 30 100.0 31 .............................. CCGCCCCAACCCTCACCAGATGGCGTTCTTG 180996 30 96.7 31 .............................C CGACCGCTACGGGCCCGAGCGCGGTCATGGC 180935 30 96.7 31 .............................T TCCGGCCAGAGCCCCACGAGATCGACCCCGT 180874 30 96.7 31 .............................A CCCACCGCCCGCCGATGATCAAGGTCACGGA 180813 30 100.0 31 .............................. TCGGCGCCCTTCTTGGCGCGCTGCTGCATGG 180752 30 100.0 31 .............................. ACTCCGACAGCGCCAGGGTGGCCCGCCACAG 180691 30 96.7 31 .............................C GTGGTCGCGAACAGGTGCGGCCCGATGCTCG 180630 30 96.7 31 .............................C AACGGGAGGACGAATGAGCAACGCCCGGCTG 180569 30 93.3 32 ............................AC TCATATGGGACGGGGTCTGATGTTGAGCGGCG 180507 30 96.7 31 .............................C CGAACTGGCCCGCCACCCGGTTGCAGCTCGG 180446 30 96.7 31 .............................C TCCTGGAGACGAGGACCACGAGCCTTCCACT 180385 30 100.0 31 .............................. TCGCGGTCACCCCCGACAACCTGATCGGATC 180324 30 96.7 30 .............................A GTTCTCCTCCAACCAGAGCGTCTATTCAAG 180264 30 100.0 31 .............................. AGGCGCGGGGGCCGGTGAGGGTGTCGCGGTA 180203 30 96.7 31 .............................T CGCTTCACGGCCTGCTGGAGGACGAGAACCT 180142 30 96.7 31 .............................C GGAAGGGAGCCCCCGGCCTGCCGGGGATGTC 180081 30 96.7 31 .............................A CCGGGTCGGCACAGCACGGGGTGAGGAACCG 180020 30 96.7 31 .............................A CCATGGGAGCGCGCACCTCGCGATGGAGCGT 179959 30 96.7 31 .............................T ACGTTTCGCCTGCGTCGCTGGACGACGCGAC 179898 30 93.3 31 ...............A.............C CGGCGAGCGTGGAGAAGGTCGTCTCCATGAC 179837 30 93.3 31 .........................C...T GCTCCCACGGCAAGCGCGGGATCTCAGTCAC 179776 30 96.7 31 .............................C GCGGCGGGCACCCGGACAGAGCGGGCGCCCC 179715 30 96.7 31 .............................T CCAGCGGTCGCCGGACGAGCCCGAGCCGGAA 179654 30 93.3 30 .....................C.......C AGAGTCCTCGGTGAACCAGACTCGGAGGAC T [179627] 179593 30 80.0 0 .....T.....CTG.........A.....T | ========== ====== ====== ====== ============================== ================================ ================== 50 30 96.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCTCCGACAGCCGCCCCCGCAGCCAAGCACCCCCCACTTCGCCCTCGAACACAAGCGGATTCAACACGACAGGAGCGATCATCTTCTCCCAGTCAGCATCACCGACCACAAGAGGCCAGTTGAGCCCTCAAACTCGCATGTACAGGAAGTACGACACATTGCCCACTTCTTTCCAAATTGGGCAGGATCAGACAAATCTATGACATGCCACCGAAACGCCAAGTCATGCACCAAAGCAGACTGCCTCCACCAGATCAAGGTCCACTAAGATCCAGCGTCCATAGCCACTCACACAGCGCATCTCCAGGCACCCCTCAGAGATGGCACCACTGAGTTGAACGACCCGGGCCGACGAATCTGGCCATAGAGCCTCGCCAGTCACCGAACGCGGCGAACCGCAGGCAACTTACGCGACATCGAACCGACTGCCCGAAATGTCCTTATCCGCAGAAGTGCTTCAGAACGGCCCGACCGCTCCATAGAGTCCCAGGTCAGGGAGA # Right flank : CCATGTAGCCCCGCCATACGAGACGGTGGGATCCACAGGGACGAGATCTCCAGGTTGTCCCAGTGGTGGCGGCGTAGGTGCCGTTTGTGCCCCGCCCCGAGGCACGAACCTGCGCAACACCGGATTGTGTCCGCTCGTTGTTTGCTCGTATGTCGCGGAACATGCCGGCAGCCGACAACCCGAAAGGACATTGAAGCCGGCGGGTAACTCTTCTAATCCGACGGTCGCGGGTTCGAATCCTGCCGGGCGCGCCACCCCTGACCAGTGCAAACACCACACCCCGGACGTGCCGCCCCGCCCGCATGGGGCCGGACTGAGGCCCACCTGGGGCCCAGGCATTCCCCCACACACCGGGCAAGCCCCACACAGCAACATCAACAACGATCCCGAGCCTCGGAAAGGCAGCACTCATCGCGTATCGACCTGTCACCGGCGCCGATACGGACGGTTATCCAGTTGGTCCTCCAGGTAGAAGGACTGGGAGCCCGGGGCTCACGATT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 192329-193207 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000012.1 Actinomadura syzygii strain GKU157 NODE_12_length_438114_cov_50.029900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================== ================== 192329 30 100.0 31 .............................. GGAAGCTCGACGCCCGGATCAGGGAAGCCGT 192390 30 96.7 31 .............................T GGCCCAGGTGTTCCACGGAACACCGCCGAAG 192451 30 100.0 31 .............................. CGACTCTTCGCCCAATGCCTGGCCCTGGCTC 192512 30 100.0 31 .............................. GCGCTACTCCCTGGAAGAGGCAGTAGCGGAA 192573 30 100.0 31 .............................. GAACGAACGTGTTCTCGTACTGGGTGTGGAA 192634 30 96.7 31 .............................T GGTAGTAGAGCTGGCGCAGGGTCAGGTCGAA 192695 30 96.7 31 .............................A GCGACGACCCGACTTGGTAAGGGGGGTGTCC 192756 30 96.7 31 .............................C GGATCGTGTGTCCGGACGCCGAGTTCGGGTC 192817 30 100.0 31 .............................. TGTCTCCCTTGCCACTATCTAACGCGGCGCG 192878 30 100.0 31 .............................. TGTGCGGGTACACGCCACTGACCGCCGCGCC 192939 30 96.7 31 .............................T TCAGGTACCTCAGGTTCCCCAGGTCGAAGGA 193000 30 96.7 31 .............................A CCCCCGGACATGCGAAAACCCCCGGGCCGCG 193061 30 96.7 88 .............................A ACTATCAGCTGGCGGTAGAGGCGGTGAAGGAGTGCTCTCCGCGCGGGGATGATCCGCGATCTACGCTGAGACGTTGCCCTACGCCGGG 193179 29 76.7 0 ....GT........T.G.....-....T.A | ========== ====== ====== ====== ============================== ======================================================================================== ================== 14 30 96.7 35 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CACGTCACTTTGCAAAGCGACCACGGCATGAACATCGAGTCCGGACGCAACTACGCCGAAGACGTGCACTGGTGACCATCATCATCCTCACCAACTGCCCTGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTGATGGAGATCGCCCCTGGCGTCTTTATCGGCGGCCCCTCCGCCCGCATCAGGCAGGCCCTCTGGGACGAGGTGCACCAGTACGCCGACACCGGCCGCGCCCTGCTCTGCTACACCACCAACAACGAGCAGGGTTTCACCTTCGAAACCCGCGACCACAAATGGCATCCCATCGACCACGACGGCCTGACCCTGCTCCGCCGCCCCAAGTCCCAGCCGAGCATTTCTTCCAAGCCCCCGCCCGCGGGCTGGAGCAAGGCCTCCAAACGCCGCCGCTACGGCCGCCGCTGACCCGAGCCCGAAATGTCGGAATCTGTGAAAGTGCTCCAAAACGAGCCCAACACCCGACAAACCCGCAGGTCAGCCAGA # Right flank : AAATACATGATCGAAGAGGACTGGCAGGCCACTACCCAGGCTCATTCATTGGGCACCTCGACGCTCTTGTCGGTGTCGGCGTGCCGCCCCACACCCTGAGGCTGCTGCGCCACCATCGCGCTGCGGCCTGCTAAGCGGCAGGTCGGCCCGCCGCACGGCCGCGTTCCAGGCCGTCCTTGCCGCTGTGGCGCGGGACACTGCTGCGATCGGTGCTCATGCTCACGCCCGACTCGCCGTCTCTGCGCGCTCGGATCAGCTTGAGCGAAGCGAAGACTGAGGGCGTCCGATCAACACAGAGAGCTGACATCTCGGGCGCATCTATGCAATTGCCTCACGGTGACATCGAAGCCCCTACCAGACGGGTTTGGCCGGGAATGCAATATTCCGGTAAAGCGAGGGTCACGCCGAGTATTATTTTGATTTTGGGACCTGCGATTGGCGCTGTGTCAGCAGGGCCGATATTTACTCGATGAAGTCAAGTATGTTCAGATACCAGTCGA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 408752-407412 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000013.1 Actinomadura syzygii strain GKU157 NODE_13_length_408768_cov_52.417266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 408751 37 100.0 36 ..................................... GCCGTGGCCGCGCGCCTTTCGGCTGCCTGCTCTCCG 408678 37 100.0 36 ..................................... GCCGTGGCCGCGCGCCTTTCGGCTGCCTGCTCTCCG 408605 37 100.0 34 ..................................... CTGCCGCTTGCCATGCCGTCGACATCCGGACCGG 408534 37 100.0 38 ..................................... ACCCCACCCGACATGTGGTCTACCGACCGTCCCGCCCT 408459 37 100.0 37 ..................................... ACGCAGCCTGAGCAGCCCTTCAGCGGCTTGAACTGGC 408385 37 100.0 37 ..................................... TATCCGAACCCGCTCGGCCGGGATATCGGTGACCTGG 408311 37 100.0 33 ..................................... TTTCTGGAGGGGTCGGGCCCGTCCCGCCGCCCG 408241 37 97.3 35 ........T............................ TTCACCCTGACCGAGAACATCCGGAGGAAGCCCCG 408169 37 100.0 36 ..................................... TCGTCCACGCGGCATTCGCAGTCGCCCTGCTCCAGG 408096 37 100.0 37 ..................................... GTCAACGTTCAGGGCCATCGGCCACCGGCCGCGCCCG 408022 37 100.0 36 ..................................... GGGTGGGGGACCGGCGATCAGTGGCAGGGCCTGCAG 407949 37 100.0 35 ..................................... TCTATGGTGATGGGCGTGGCGAACCGCCAGTCGTG 407877 37 100.0 38 ..................................... GATTGCGGCGCTGCGGCCGTCATTGACCGGAACTGGTT 407802 37 100.0 35 ..................................... GACGTGACGATCGCCGGGGACGCCCGCCACGGGGA 407730 37 97.3 36 ..........T.......................... CTGGCGGAATCGTGGCGCTCGTCGCCGCGCTGTGCC 407657 37 100.0 35 ..................................... CCGGCAAGGACGCCAAGACCGCCACCTGGCCTGCT 407585 37 97.3 24 ...................G................. TTCGAGAACGCGGCCACGCCGAAC Deletion [407525] 407524 37 94.6 39 C..................G................. TGGCGGTGGCCCGCGGTGACGCTGGCTGAACTGGTCGAT 407448 36 81.1 0 ....T......TA..-..C...........G.....T | G [407428] ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 98.3 35 GTGGCGCCCGCCCTCAGCGACGGGCGAGGATCGCAAC # Left flank : CGGCTGCCTGCTCTCC # Right flank : CGGATTACGCAGGCTCCCCGCCGTGGGCGGGCCCCTATCTTTGCAGGTGGACGAGGGTCAATGCTGCGTTGGGATGGGTTGGCGCCTTCTACGCCACTCGTCAGTGATGGGCGCAGGGCATCGGTGGAACACAACTTGTCGGTAGGTTCCTCTGCTTGCTTTCGTTGACCGGATTCGGTCGCTTGTTTGGAGGCTGAATGATCATTTGTCGGGTGTAGATACGATCCGGTGCATCGGAGTTGCGCTTCCTGTGTTGGATTGAGGTGAAGCGTGTCGGGGGAGTTGTGGGCGCATAGTGTCAACGGATTCGGTGATAGGCACTGCCTAGTTGATCATTTGCGTGGTACGGCTTCTTTGGCGCGCACGTATGGTTCGGTTTTTCGAGCTGGCCGGTTGGCTGAAGGTCTGGCGCTGCTCCATGACGTCGGCAAAGGAGCGTGTGCCTGGCAGGAGGGGCTGGCACGTGCTGAGGCCGGTGGCGGCCGAGTGTTTGATCCGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCAGCGACGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3785-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000014.1 Actinomadura syzygii strain GKU157 NODE_14_length_382302_cov_50.847256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3784 37 100.0 39 ..................................... TTAGCGTCACGAGGTATGAGCCTCCCCATCGGCATCGAG 3708 37 100.0 36 ..................................... CAGAAGATGGCCGCCGCCGGACGCAAGAAATAACCG 3635 37 100.0 39 ..................................... GCCGTGATGGGCGCGGCCTACCCGCTCGCGCCCGCCCGG 3559 37 100.0 35 ..................................... TTGCCGTTGCCGCGCTGCCAGTTCGCGACCTCGGC 3487 37 100.0 35 ..................................... GCGTTTGGCAGCGATGACGTGGCCGGTGGTCTCGG 3415 37 100.0 39 ..................................... CGACTGAGCGGTCCATGCGCTCGGCGGCCTGTGCCGCGG 3339 37 100.0 38 ..................................... CTCGTCTTGCAGGAGATGGCCTGACGCCGCACCTTCCG 3264 37 100.0 39 ..................................... CGACTGAGCGGTCCATGCGCTCGGCGGCCTGTGCCGCGG 3188 37 100.0 36 ..................................... CGGGTGACCGTGTCGTACATCCGCCGCAGTTCCGGC 3115 37 100.0 37 ..................................... GCCTTCGGGCTCAAAGTAGGCGTCGCTCTTGGCGTCG 3041 37 100.0 34 ..................................... GGCTGGATGTCTGGTATCCGCAGCGCGGCACGGA 2970 37 100.0 37 ..................................... GTCCGCGGGCCGCGCGGCCGGGCCGAGGCTCCTCGTC 2896 37 100.0 35 ..................................... CACCACATCGACCGGCCGCGCAGCTCGGGGTGGTC 2824 37 100.0 36 ..................................... TCGTGGTGGCACAGCTGCACGCCGTCCGGCGCGGTG 2751 37 100.0 37 ..................................... GACGTCCTGCGTCGCGACATGGCGGCCGTGCAGGCCG 2677 37 100.0 34 ..................................... AACGAGCTGCTCCTGCGCAACCCGCAGAAGCTCA 2606 37 100.0 33 ..................................... ACGAAGTTCGCGGCGTCCCTGGCCCAGATGGCC 2536 37 100.0 36 ..................................... ACCCTGCCGATCAGCCGGACGATCATCAGGGGGCGG 2463 37 100.0 36 ..................................... GCGCTGTCCGCGCGGACCCCGCGCCCCCTTGTCGGG 2390 37 100.0 37 ..................................... ACCCTGCCGATCAGCCGGACGATCATCAGGGGGCGGG 2316 37 94.6 27 TG................................... GCGCTGTCCGCGCGGACCCTTGTCGGG Deletion [2253] 2252 37 100.0 38 ..................................... ATCTCCTCCAGGCCGCCCTCGTACCCGCTGGGGGTCAC 2177 37 100.0 38 ..................................... AGGAAGGCGTACGTGCGTGCCTGCGCCGGGAATCGAAG 2102 37 100.0 38 ..................................... AGGAAGGCGTACGTGCGTGCCTGCGCCGGGAATCGAAG 2027 37 100.0 35 ..................................... ACGTCGCAGGTCTTCAGGAGCGCGCGGATCTCGGC 1955 37 100.0 35 ..................................... ACGTCGCAGGTCTTCAGGAGCGCGCGGATCTCGGC 1883 37 100.0 35 ..................................... GACCTGCTGACCTGGACGGACACGACGTGGTGCAC 1811 37 100.0 38 ..................................... GAGAATGCCGCCTACATCGAATACGCGGACGGGACGGC 1736 37 100.0 38 ..................................... CCTGCAGCGGCGCGGGCCGGGCGGTCGCTGCAGCGCTG 1661 37 100.0 34 ..................................... GCTCGAAGTGTTTGGTCACGGCAGGTACCCCGCG 1590 37 100.0 35 ..................................... GTCGAGACAGTCCCGGATACGGTCCCGGTCGGTGT 1518 37 100.0 37 ..................................... GCCTCGTCCGGCTCCGGGGACAGCAACGTCCAGATGT 1444 37 100.0 35 ..................................... TCCACTACGCAGGCGGGAATTCTTTTCATCGACCG 1372 37 100.0 35 ..................................... TCCACGACCGTCACGCGGACCGTCATGCACGTCCA 1300 37 100.0 37 ..................................... GCGGCAAGGGCACGTATGTGCTCGCCCCGGATCACGA 1226 37 100.0 38 ..................................... GTCTGGTGCCAGCCGGTCGCCGCGGCGAGCTGCACGCC 1151 37 100.0 36 ..................................... CTCTTCCTGCGCGGCAGATCCGAGCGGACCCAGGAG 1078 37 100.0 34 ..................................... AAAATGCGGATCACGGCCGTGAAGTGGATCCGGC 1007 37 100.0 37 ..................................... GGGATGATGTCCCTGCTCTCCCCCTGGCTGTGGGCGA 933 37 100.0 38 ..................................... CGCAACAACGAGTCGGGCCTGCGCCGGTTCCTGTCCCG 858 37 100.0 36 ..................................... CCGCTGGCGCGTGCGGTGCAGCGCCGCGGTGACGGG 785 37 100.0 39 ..................................... CCGTTCGACGTCACCGTAGGCGGCGAGGTCATCACCGTC 709 37 100.0 37 ..................................... CGGTGAGCGTTCCGGCCGTCGCGAGCGTCCCCGTCCG 635 37 100.0 35 ..................................... AGGTTGACGACGCCCTCGACTGGACGCGCGGCAAG 563 37 100.0 36 ..................................... TTGCTGTCCCGCGCGCCGGGCGCGGGAAGTCTCAAA 490 37 100.0 36 ..................................... CTCAACTGGCGCGACCGCATGGCCGAGATCGCACCC 417 37 100.0 35 ..................................... GACCTGCTCGTCAAGGGCGCGCAGTCCGGCGCCAA 345 37 100.0 34 ..................................... TTGATCGGCCGCTGGCCGGGGACCTTGCCCGCGG 274 37 100.0 37 ..................................... TCCCTCGCGCTCGCTTCGGACACCGGCTGGCTGCCCG 200 37 100.0 36 ..................................... TTCACCAGGTCGTCCGGCGCCGTGGTGAAGTCGGGG 127 37 100.0 37 ..................................... TTGTCCGTGGCCGCGGCGCGGCGCGGGGTCTTCGTGT 53 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 52 37 99.9 36 GTGGCGCCCGCCCTCAGCGACGGGCGAGGATCGCAAC # Left flank : ACTCGCCACGCACTACCGCGCCGTCGTCACCATCGCCAGCCTCGTCCTCTGGCTCAACCACGATCCACAAAACAGGCCCTGGCCCAGGAGGCCGCGTCGAGCACGGCTTGGTTGATCATGTTCGATGGCGTTGCCTCGAAGGTACGTTGTGTGGTCCGTGAATCTGGGGGTTGAGCTCCTCAAGACCTATGCTGGTTCGGCGCCCATCACCCGTGCCTCCGGCAAGTTATCGTCCACTACCCAGAATCGGAAAGGATCGCTTGGGTGAATGCGTGTATGCATGGTGGCGTGACGACGCCAGCCCAGGCGATGGACTTCGATGAGGTCGCGCTGGGCCAGTCAAAGGCTGGAGGCCGGACAACGCCACAGCTTCGGAACCTCTAGCGCTCAGACGATCCCCAAGGGGTTCTGAAGTGGGTATGAGACACTTTGTGATGTTTCACCGTCTTTGCTCTAGAGATCAACCTGTCACAACATGTAATAACTGCACTTGAAGTGCC # Right flank : CTTGTCCGTGGCCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCAGCGACGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.50,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 186741-187196 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000016.1 Actinomadura syzygii strain GKU157 NODE_16_length_304713_cov_54.016588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 186741 29 96.6 32 ............................C CGGCCGACGCGGACACCGGCTCCGGGGCAGTC 186802 29 96.6 32 ............................C CGCTCAGGCCCGTTGCCGCCCCACTGGTACCA 186863 29 96.6 32 ............................G GGCGACCGCATACGGCCTTATCGGATGTGCGG 186924 29 96.6 32 ....C........................ CTGCGGGGAGTTGGACGGGGCCCCTTCGATCA 186985 29 100.0 32 ............................. CGTGCGAGTCTCCACACGCGAAATAACGAAGA 187046 29 100.0 32 ............................. GAGCGTGCCGCCAGGCAGGCGCACTTTGGGGC 187107 29 100.0 32 ............................. CCACCGTGCCCGCATGAAAGGGTCTGCTCAGT 187168 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTCGGCCCCGCGCACGCGGGGATGGTTCT # Left flank : TGATCCGCGCGACCACGTTCCCCGCCGAAGCGGTCGTGCCCCCGGCCTAGACCTGGCCGATCCGATGGCTGTGAGCATCGAAGGCCGGGCCTGATTGGACCGGGTCTGGGCAAGCCGCCAGGTCCGCGAAGCTGTAGCGATGGCCAGCCCGGTTCTGGCCGCCCGCGTCGACCACCTCATGGCCATCGGCGATGTCTCCGAGCGGCGGCTTCGCCGCGCTGTGGCGTCGCTGGTGTCCTATCTGCTGGGATGGGAACGTCGCGCCACTCGGGCCTTGCCTGCACTCTTACCCCACAGCACCGCCCGTGGGTTCCCCGCACTCGACCCGATCACCCGGTACTCACACAACGTAAGCTGGCCACACCCACCGACAGAACCACCCGCCCCAGCAACCCCACCCCACGACAACACCACCGGCCCCAGGCCCTCTCACCGAGCATGATCACAAACCAACCGAACGAAAAATCCACCTCTCGCCGATAACGTCGCGGTCAGAAAGT # Right flank : CGGGTTCAGTCCCGGTACGGTCGCTGAGTTGAGGCTGGGTCCCGCGCACAGCGTGGACCTGTCAGTCGGGGCGCTCCAGCACTGCCGATCCGGATGATCGCGGGACTGTGAAGCGGGACGGGATGGTTAGGCGGGCGCTGGCTGGAGGTGGGACGAGCGCCCGTCTGAGGCAGACCCGTACCGGATTCAAGCCGGCGCACGACCGCTCATTCAGAGCTATGGAGTCGCTAGGGGGCCGGGCACGGCCGCCAGTGCGCGAGCGGCTCTGCTGGCGAACGCCGGGTCTTCCTGGCGCTCGGGGCGAGAGGCCGTCTTCACCCCTGAGGCGCGCTGCGAGAATCTCTCCGCAGGCTTCCCGCTTGCCCTTAGTCGCTGTTAGGGCCTGTTTGAATCGCTCAGGCTCATTGCCCTTCCACCAGCCCCGCCCCCGCGACGCGCTTCGCTGCACGTACAACGGCAACTGCTTCAGAAGTACGTCATCGACCGTCAAGCACGACAAC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191774-193936 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFF01000016.1 Actinomadura syzygii strain GKU157 NODE_16_length_304713_cov_54.016588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191774 29 96.6 32 ............................T CTCCGACGTCAACCGGCACATCGGGCAGGTGC 191835 29 100.0 32 ............................. GGGCGCGGCCGCCCACGGCCCTCGTATGCGTC 191896 29 100.0 32 ............................. CAGGTCGGTGCCGCAGTCATCGACGTGCCCGC 191957 29 100.0 32 ............................. TGCGTCTTCCCGGACGGCAGGGTCAGGAGCAC 192018 29 100.0 32 ............................. CAGGTCGGTGCCGCAGTCATCGACGTGCCCGC 192079 29 100.0 32 ............................. TGCGTCTTCCCGGACGGCAGGGTCAGGAGCAC 192140 29 100.0 32 ............................. GCCGTCAGCTCCTCGGCCGTCGCGTACGACAT 192201 29 96.6 32 ............................G GGCTGCGGCGCCGAGCGCACGGCGGCCGGGAC 192262 29 96.6 32 ............................G CAGCGGGAGATCGCCGAAGCCGTCGTCGACCA 192323 29 100.0 32 ............................. CGGTCACCCCGGCGGACGCCGTCGAGACCGCG 192384 29 100.0 32 ............................. CCGGTCAGCACCGGGATCAGGACGCGCAGGTT 192445 29 96.6 32 ............................G ATGCGCGGGTCTCCTGTCGGGCGTTCCGGCCA 192506 29 100.0 32 ............................. TGGTCGGTCTCGGGTGTGGTGGGGCGCTTGCG 192567 29 100.0 32 ............................. GGCTGATGATCTTCATAGGAGGCTCCCGGGGT 192628 29 100.0 32 ............................. CGCGCCCCTCATAGGCGCGCCCGGCGTGGTCG 192689 29 96.6 32 ............................G GTGAGGTTCACCCAGCCGGTGTGAGAGCCGAG 192750 29 96.6 32 ............................G GATGCCTACGGGGATAGCTACTGGGCTCCTGT 192811 29 100.0 32 ............................. ACCCGATCCGGGTCCCCCTCATGGGACACCAC 192872 29 96.6 32 ............................T GGCGGTCACGTTCTGGCCGACACCCCAATCCT 192933 29 93.1 32 ....A.......................G CGCGATCCCAGGGCGACGGTGTTCTGCATGAA 192994 29 100.0 32 ............................. GCCGTCCGGCCGAGGTGGTAGACCTCGAGTAG 193055 29 96.6 32 ............................G TTCAACCGCGGCAACGTCCGCACGGCCGTGTC 193116 29 100.0 32 ............................. AGGGCGGCTTCTACGCGGAGGTACGCGAAGCC 193177 29 93.1 32 ........................C...T TCGGGGTCGGCGGGTTTCGCCGATGTGGCGGA 193238 29 93.1 32 ..............T.............G AACGAGTGTCAGCGAGCTGCCCGTGCCCTGCA 193299 29 93.1 32 ....C.........T.............. GCAGACCGAAGCCTGTTGATCATTGGTTGGTC 193360 29 89.7 32 ........T.....T.............G CTTGCGGAGCTTGCGGTCGACCGCGTTGCCCA 193421 29 89.7 32 .....T......T.T.............. AGGTTCCCGTCGGTGCCGAGGGCGCGTTCGTT 193482 29 89.7 32 ................T.......A...A CTCGTGGTCGTCAGACCTCTCCACGCGGCGAA 193543 29 79.3 31 C.....G.........G......A...TG GCGGTCACCTGGCCCTGGCGCTCACCCCAGC T [193558] 193604 29 96.6 32 ............................G CGAGGCGGTCATGACCGAGATCCGTGGCCTCA 193665 29 96.6 31 ............................G CTCGCACAAGCGCGTTCCTTTGGGCTCGGTC 193725 29 96.6 32 ............................G CGCGATGGGGTATGGGAAGAGGGCGGCCGGTG 193786 29 96.6 32 ............................G TCCTGGGCCCGGACCAGCACCTGTACATCACC 193847 29 96.6 32 ............................T TGGTAGATCGAATAGACCACGGCTGCCGTGGT 193908 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 96.6 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : GGTCCCTGTAGCACGGCCCAGCGTAGAACCCAACGGAGCATAGGCCGAGATCAGGCGCGGGGACCATTCCCGCGTGCACAGGGAGCACTCGCCGGTGTAGACGTTCACCGTCACGTTGCCGGGACCACTTCCACGGTAGATGCTTCTGGCAGGTCGTTGTCCGCCTGAGCGAGCATCAGTCGGCCCACCCAAGAGCTCAGCAAGAACGTCCCTACCGCTGCGCTCGCGCCCACCCTGGCTCGTTCCTCGGTCCCTTGAAACGTGTCCTTCCCGATGAATCGGAGAGTCGCGGCCGGCACCGCCAGCGGGTTCCCCGCACTCGACCCCGACCACCCGATACTCACACAACGTAAGCTAGCCACACCCACCGACAGAACCACCCGCCCACCAAACCGACCCCACGACAACACCACAGACCCCAGACGCCTCCACCGACCATGATCACAAACCAACCGAACGAAAACCCCACCCCTCGCCGATAACGTTGCAGGTCACAAAGT # Right flank : CGATCCCCGCACGCGCTCAGGGATAGCAGCCCAGCGAACGTCACGGACCCTTGTCGAGAATGCGGGCTGCAAGTGCCGGCCAGTCGTCCGCGTCCATGGTGTGGGTCACATCTCATGGCATTTTCGTGCTGGTCGTGTGCGGTGCGCCGAGATTGTCGCGCATTGGTTCGAGTGCATCCCTGGCGATCCCCGGTTCAGCCCCGGCGCCGCGCGCTGGGAGAACTGGTCCGCACCCAGTACTGTGCAGCCCGATTCCCGCCCCCGCCGTTCACCCCACCGCTGCGCGTGACGGGGCCGGGAGAGGCGTGGTTTCCCTACCGGCCGCCTGGAGCATGATCGGGTTGCCCGGCCGGTCGATCCAAAGCTCGCCGCCACCCCGAGTGACCGTGAGCCCGAAACGGTCCAGGCCAGGACGGCCGAAATGCTGCCACTGGAAGTAGGCCTCCACCGCCTCGTCCCACAGATCGCGGCGGCCGTGCTGATGCACCTCGAAGGCGTCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //