Array 1 7122-6827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNY010000056.1 Longicatena caecimuris strain MSK.14.38 AEIFNGHM_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 7121 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 7054 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 6989 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 6859 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 4 33 97.7 55 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AAATGCTTGAATGTATAGTGTTTATGCGGATAATTGAAAATTAGATATAAAATTTAAAGATAACTTCGATAAT # Right flank : TATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACTG # Questionable array : NO Score: 3.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-2.44, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44418-45109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNY010000015.1 Longicatena caecimuris strain MSK.14.38 AEIFNGHM_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 44418 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 44483 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 44549 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 44619 33 100.0 36 ................................. AACCTTTACTTTTGCTTTAGCAGGAGTTTTTAGCTC 44688 33 97.0 34 .......T......................... GATTTAACGAACATCATAAACCAAATGAACAAGT 44755 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 44821 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 44889 33 100.0 157 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAGGTCGCATCTTGTAAGAAGCGTGAGTTGAAATGATAAAGTATTCGATAGAGCACTCTATGAGAAACGCCGCATTCGCGAGATGTGTGAGTTGAAATTGAATCGTACATAATTATTTGTCAAAGT 45079 31 90.9 0 ....--.A......................... | ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 9 33 98.3 50 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : CGCTTAGAGGCAGTGCGTGAGGCGGATGCGATCTTGCGTGAGGAATTCCATAATGCAGGATTGGATAAAAAGGTTTGGCAGTATTTCACAGTTGTTCCTGATTTTAAATCTGTAGGTGTACGTGATAATGCGAGATGTTTTGAATATCCTGTGATTTTACGTGCGGTGAATACGGTGGATGCCATGACGGCGACGATTGAGCAGATTGACTGGCCGGTATTGTTGAAGATAACGGATCGTATCTTGAAGGAAGTTAAGAATGTGAATCGTGTTTGTTATGACCTGTCACCAAAACCTACGGCGACCATTGAGTGGGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTAATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : TGTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-1.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 57193-57829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBNY010000015.1 Longicatena caecimuris strain MSK.14.38 AEIFNGHM_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 57193 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 57259 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 57327 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 57395 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 57462 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 57529 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 57596 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 57663 33 100.0 34 ................................. ACCCTTTAAACCGGTCATTTTACTGTCAACATCA 57730 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 57797 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TTTTTTGTTTAATGATTTATAAGTAAATTATATATGCCTTTTTGACTATCTTTTTATATCTTCTCAAATGTCCGCAAAGCCTTATTTTATCGGCTCTACGGGCATTTTGCTTTTGTGGTAAACCTCACATATCTAGGTCTATCTTTTTATATTTTCGCTATCAAACGTGGTTAAAATCGTGGTAAATACTTCTATGCGATTAGACGCTGAACCTCTGATTTTGCGGTATCTATGGACGCATGAGCATACCAGTTCATTGTGATACTGATGTTTGAATGTCCCATGATATACTGTAAATCTTTCGGGTTCATGTTCTTGCTTGCCAGCCTTGTGCAGAACGTATGGCGTAGCGTATGCGGTGTGATATGTGGCAAGGGATTGTCCTTGTGTTGCTTGTTGTATTTCTTTACCATACGGACAAATAAGGCATTGTAATCAATCGCAACTTTGGGCTTGCCTTTATGATTGACAAACAGAAAATTGCTCCGTCCGTCTATCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //