Array 1 64965-62004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEG010000003.1 Salmonella enterica strain LHE 6 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64964 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 64903 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 64842 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 64781 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 64720 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 64659 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 64598 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 64537 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 64476 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 64415 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 64354 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 64293 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 64232 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 64171 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 64110 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 64049 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 63988 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 63927 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 63866 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 63805 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 63744 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 63683 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 63621 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 63560 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 63499 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 63438 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 63377 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 63316 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 63255 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 63194 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 63133 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 63072 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 63011 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 62950 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 62889 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 62828 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 62767 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 62705 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 62644 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 62583 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 62522 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 62461 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 62400 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 62339 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 62278 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 62217 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 62155 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 62094 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 62033 29 96.6 0 ............T................ | A [62006] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82597-81224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEG010000003.1 Salmonella enterica strain LHE 6 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82596 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 82535 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 82474 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 82413 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 82352 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 82291 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 82229 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 82168 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 82107 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 82046 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 81985 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 81924 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 81863 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 81801 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 81740 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 81679 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 81617 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 81556 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 81495 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 81434 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 81373 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 81312 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 81251 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //