Array 1 58-766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAO01000023.1 Porphyromonas sp. COT-239 OH1446 contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 58 33 100.0 34 ................................. TAACAGCATTACAACAGCATTATAATGGAACTAA 125 33 100.0 35 ................................. ATCATATCCCCCTCTCCCGTAATCAGCCATTCTGC 193 33 100.0 35 ................................. GTGCTAGATATGGAGTCGCCCGATGACCTGAGCGC 261 33 100.0 33 ................................. TTGGTCAGTGCCAAGCCTCGCCACATCTGTGCC 327 33 100.0 34 ................................. ATTGTTACATCGGGTCTTAGATTGGCTCGGAATA 394 33 100.0 35 ................................. ATGCCCCTGTAACACTGGACGACGTCGAGACCACC 462 33 100.0 35 ................................. GAGGTCGCACGCAATGGAGCATCCTGCCGTGTCAG 530 33 100.0 35 ................................. TGACAATCAATGGCCAGGATGTTTACGAAGCCTAT 598 33 100.0 35 ................................. GTCGTACAAAGATGAGGGAAACGGGCAGCAACCGT 666 33 100.0 35 ................................. TGGCTACTACAAGACCCTCTCCGACTGGTACGACG 734 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 11 33 100.0 35 GTCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Left flank : CTCGGGATGCGTGAATTGAAACTTGTTAGAATAATGCGCATCGTGGCACCCAATGATG # Right flank : CCACCGCCATAGCAGGAGCGATATACCTATATAAGTCGCATCCCTCTCGGGATGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : NA // Array 1 39486-39790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAO01000002.1 Porphyromonas sp. COT-239 OH1446 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 39486 33 100.0 36 ................................. CTAGATCACTTGCTGATTGATTACACCCCAAAGGTA 39555 33 100.0 34 ................................. CGTATGCTCACCTCGGGGGCTCACCTCGAGGAGT 39622 33 100.0 36 ................................. CTCGGGGGCTACGTAGCGGAAAAATCCAAGAATATC 39691 33 100.0 34 ................................. CTTAGTCCCATTAAGCCTACGGATTTCGTTGATA 39758 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 100.0 35 GTCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Left flank : ATGATGTCTGTACTTCCAGCCCATCTGGAGCGAAACGACTGAGGCAGGTCGCACGCATATGTCAAAATTATGGCCAAAGGGTGCAGAATTCTGTCTTTGAATGCCTCGTAGAGCCAGCTCAGTTTGTCTCCTTACAGCACCAGTTACTCTCCGTCATTGATAAAGAGTTAGATAGCCTGCGGATATACCACCTAGGGAATAATTACAAGAGGCAGATATTCTGCTTTGGGAAAGTAACCTCATTTGAGATAGAGGGAGAGCTAATCATCTAGAGTTTCTTGAACCTACTTCAATCTCAATAGGCTATCCCCAGGGGCTAGGTCTAAGGCTCTGCGAACCTCAAGTGCACAGCAAAACCCTGGAGATCTCGCAAGTGCTTATTCTCAGCACTTTGGCTATTTTTGTAGGACTAGTTCGTAAGAGAGATCTTTGACGTATTTGATTATTCGCATTTTACCCCTCTACAGTTCGCATAAATTCTATACTTTTGTGCCTATACT # Right flank : CCACCGCCATAGCAGGAGCGATATACCTATATAAGTCGCATCCCTCTCGGGATGCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : NA // Array 1 59-4509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAO01000037.1 Porphyromonas sp. COT-239 OH1446 contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 59 32 100.0 34 ................................ ATACCATCTTCTAGATCTTTTCTACTTTCTGCAG 125 32 100.0 39 ................................ TAGATAGGTGTGGTGAAACTGGTTAGTATCAATTACTCG 196 32 100.0 36 ................................ GACTTTGATGATGTCAGCAACGTGTGTATCGCTCTG 264 32 100.0 36 ................................ AATATGAATTGCTCTAATGTGTCGCTGGGCTTACCG 332 32 100.0 38 ................................ GCGTTGTAAAGTTAAGCGAACTAGTCCCCACTAATCAG 402 32 100.0 35 ................................ CGACTACAAGCTGGAAAAGATAGACAAAGTCTACG 469 32 100.0 34 ................................ GCCCGATGGGGCGTGGATGAGATAGACGTTCTTG 535 32 100.0 36 ................................ CCGACATTCGGATACTCGTGCGCATTGGAGGCGGTG 603 32 100.0 36 ................................ GAGAGAGCCGAACGGATTTGCTACGTTTTACCCTTG 671 32 100.0 35 ................................ TCGTCTCGCTCTCTCATACGCCTCTCACTCTCCTG 738 32 100.0 38 ................................ TTGCAGGCCGCAGCTCCCACGAGGAGCGCACCTGCCAG 808 32 100.0 35 ................................ AAAGGGCATGAGAAGATAGACGATGAGGAGGTTGG 875 32 100.0 35 ................................ GCATCCGGGAGGAGATCAACCTCCGGGACAGCCGG 942 32 100.0 37 ................................ GTGTTAATAATTGTCTATTGATACCGCAACGTCGAAG 1011 32 100.0 35 ................................ GAGCAAGCGGGAGTACTGCCTCGGGGCATGGGTAG 1078 32 100.0 35 ................................ CCCTCGTCGAGGGCAATATGCCCCCTCAGTCCTGG 1145 32 100.0 36 ................................ GTCTAGGTGATCAAAATGCATCCCCCTCTTGCAGAG 1213 32 100.0 36 ................................ ATAATACCCCCGCCCCGAAGGGCATGGGCGTGAATG 1281 32 100.0 35 ................................ AGCCCTACATCGACGGGAGCGGTGTGCTGGTGGGG 1348 32 100.0 37 ................................ GCCGCTCGCAATGAGATCACCAAGGCCCAGGCAGCTG 1417 32 100.0 38 ................................ AGACTGAGCATGGGCGTATATCGGCCCTCGAATACCTG 1487 32 100.0 36 ................................ CTCGCCGCTGGAGTAGAGGGACACGGGACAGCTCAG 1555 32 100.0 36 ................................ CTGATCTGACTCTCGTCTACCAGCTGATGGATCGTG 1623 32 100.0 37 ................................ CCCGTTTACCTTCTCAACGAGCTTTCCTACTACGGGG 1692 32 100.0 36 ................................ GTCTGCTCTAGTAGGCTCTTAGCCCACTGCGGTGCG 1760 32 100.0 37 ................................ CGATCTATTATACAGGTCTAGGGAGAGATTGACCACC 1829 32 100.0 35 ................................ TGAGCAGGGATCAGTGGCAGGATATGCTTGAGCAC 1896 32 100.0 35 ................................ TCTGAACAAGTGGGATATAGCTCTTCAAGTCTGCC 1963 32 100.0 36 ................................ CAAGCTATGACACTATTAAAAGGGGGACATTTATTC 2031 32 100.0 36 ................................ CAGCATGAGAGAGGTCGATCAATCTGCGAAAACCAC 2099 32 100.0 38 ................................ CTATATTCCTCTACACCAGTCATCTGACACCTACGACC 2169 32 100.0 36 ................................ CCCGATGCTATCTCTCAGAATGACCCTGTTCGTCTC 2237 32 100.0 37 ................................ GCTTGGGCACAGATGTAGCCTTTAACCTGCGCCTAAC 2306 32 100.0 36 ................................ GCCTCGATGTTGGACGGGACTTTTGGGTACGACTTC 2374 32 100.0 36 ................................ TTGCGCACACAGGTACCTCGCTGGCGGCGAGGGTTC 2442 32 100.0 35 ................................ CTCGCACCCGCCCTGATCTGATCCAGGGTTAGATC 2509 32 100.0 35 ................................ ATAGGTATCTCGGTAAGCAGACGGAAAAAGGTGTC 2576 32 100.0 36 ................................ AAGCAAGAAGCTGTGGCAATAGGCACATCGGGGCAC 2644 32 100.0 36 ................................ GCGGCCATGGTCTACTACATATGTGCGATTACCTGC 2712 32 100.0 36 ................................ ATGGGGGTGGTTTCGAGGCCCACGAGGCGCATGGAC 2780 32 100.0 35 ................................ ACCCTCCCTGCCGCCAGCACCCCGGGGATGTCGGC 2847 32 100.0 36 ................................ TTCTTACTTTCCAGAAAAAAAACTGGAGATGAGGAC 2915 32 100.0 35 ................................ ACATAGGCCTGTAGCCGATCGTGTAGGAGCTGATC 2982 32 100.0 36 ................................ TGCTACCTCTGCATAGGAGACAATGGGAGCGGACAC 3050 32 100.0 36 ................................ CTGGATTATATGCTCGACGAGATTGAACTCAATCCC 3118 32 100.0 35 ................................ TTGTCTACCTGAACTCCTCGTCTACCTGGCCTCCC 3185 32 100.0 35 ................................ TTCGACCACAGCTCGACCATGATTGCATCCTCCCC 3252 32 100.0 35 ................................ AATGAAGAGAATGAGGCATTACCCAGCTTATCGAC 3319 32 100.0 36 ................................ GGCTCCAGGCGGCCCGAGATGCAGGAGGCGTGGGAC 3387 32 100.0 37 ................................ GTCCACCGCCAGCTACGCCCAACGTTGGGGTACTGGC 3456 32 100.0 37 ................................ GTGAACGAGGCATTGCCGAGCTTGTCGATCAGCCAGC 3525 32 100.0 36 ................................ GGGGCACTCCTGGCTTGGGTAACAAGCCGCAGGATC 3593 32 96.9 35 A............................... CTCAACGGCGAGGATGTGTGGCTGCGCTGGCATGC 3660 32 100.0 38 ................................ CTAACCTACCCAAGGGGAGGTATCGCCTCTTGGCTCGC 3730 32 100.0 36 ................................ TCCTATAGTAGACCCCCAAGGCGATCAGGAGCATTC 3798 32 100.0 36 ................................ GCAAGAGTGATCCGGTAGCTGGCGAGGTCTCCTACC 3866 32 100.0 36 ................................ GGTGGCGTTAGGGCTGTGCACGACTGCAGCCGCAAC 3934 32 100.0 36 ................................ TCCTTGAAGTGATTAACGGCAATCACCCCGACCTTC 4002 32 96.9 36 A............................... AAGGAGGCGATCTAGATCGCGCTCACCGAATACCCC 4070 32 100.0 36 ................................ CTCTCCAGGTGGTCGTCCTGGAGAGACCAGTGAGTG 4138 32 100.0 36 ................................ CTCGACATCGCCGCCCAAGGCCCGCACGTCCTCTCG 4206 32 100.0 34 ................................ ATACTATCACGCTGGGCGCAATACTTGCAGTTGG 4272 32 100.0 38 ................................ TCTCCATAGCGGCACGCCCTGCGTGCGGCGTTGTACTG 4342 32 100.0 35 ................................ GTCGTAGCATCGGGTTGTGCCTCGATAACCCGATG 4409 32 100.0 37 ................................ CTCGTTGATCTCAGAGATTTCCTTCCGGTATCGCAGG 4478 32 96.9 0 ..A............................. | ========== ====== ====== ====== ================================ ======================================= ================== 66 32 99.9 36 TCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Left flank : CTCGGGATGCGTGAATTGAAACTTGTTAGAATAATGCGCATCGTGGCACCCAATGATGT # Right flank : CATCCTAGTACTCCTTTCCGTGCTTTGCTGGTCGAGGTCGCATCCCTCTCGGGGAATGGGCTGGGAGGGGTGAGGGGAGAAGCGAGAGGGCAAAAAGAGAGAGGGGGCACACGAAACTTTCGTTTCGTGTGCCCCCTCTTTGTATATAATCTCTAGGGAAGAGCTTACTTCACCTTAGCCACAATAGCCTTGAAGGCCTCTGGGTGATTGACAGCTAGATCTGCAAGGACCTTGCGGTTGATCTCGATACCAGCTGCATGCAGAGCACCCATCAGACGAGAGTAAGACATACCCTCGAGGCGCGCAGCGGCATTGATACGCTGGATCCAAAGTGAGCGGAAGTTACGCTTCTTATTCTTACGGTCGCGGTAAGCATAGGTCAGACCCTTCTCCCAAGTATTCTTGGCTACAGTCCATACATTCTTACGGGCTCCGTAATACCCACGAGTTAGCTTGAGAATTCTCTTTCTCTTGGCACGTGAAGCTACGTGATTAACTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 1 11478-10559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAO01000018.1 Porphyromonas sp. COT-239 OH1446 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11477 37 91.9 37 CG..G................................ GATATGCATTGGTGTTTCATTTGGCCCATTATATGGG 11403 37 100.0 37 ..................................... TTGCTCAAGGCAACGAAGAATTAATCCTCAAAGCTCT 11329 37 97.3 35 .................T................... GTCTTGGATGCTACCAAGTCCTCCTCCCTGAACTA 11257 37 100.0 40 ..................................... AAGAGTTTTTGCGAGCAAGAGGACTTGAGCCTCCTTTTGT 11180 37 100.0 36 ..................................... TTGGGAGTAGGGAAGACTTTTGCTCAAGGCAACGAA 11107 37 100.0 36 ..................................... CAAACAAAAATGAAAACAAAATTATTTTTTTTCATT 11034 37 100.0 36 ..................................... TCAGATATAACCCTAAAAAAGATGGCTTTGAGCACA 10961 37 100.0 37 ..................................... ATTTGTTTTATGGTGATGTAAGTCAGATTGATAAACA 10887 37 100.0 36 ..................................... GTCGTATGGAGATACTACGATCTCTTTCGAGATCCT 10814 37 100.0 36 ..................................... CAGTACTTCCCAGACCATAAGGGACACCTCTTCTTA 10741 37 100.0 37 ..................................... TCAAGCACAACAAAAAAAACCTACTACGTTACTGGGC 10667 37 100.0 34 ..................................... TTAAATTACTAACCAGACCTTTTTCCTTCATTTC 10596 37 83.8 0 .......................CGC...G.....GG | G [10561] ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 97.9 36 GTCTTGATAATCCTATAGACTGTATTTGTATAGATAC # Left flank : GGTCTTATTCGCTGCCTGGGCATTCTTCTTCAGCTCCTTGACGAGGAAGGCTGGTAGCTCCTGCTTAGGCACTTTGTCGATCACGCTCTTGTCCACATAGAGGCAGACATAGGGGCTCTTGCTGTCCGAGGGAGTTACGGTGAAGGAGTAGGAGGTGGAGGTTACATCCCCGTCCTCGATCTCGAAGGTAACGTCGTAGGGGTCTACGACATCCACACCGATGAACTCTTTCGTTTTGTCTGCACATCCTACCAGGCCTCCAACGAGGAGGGCGGAGAGCAGCCAAAGGGTACTCAGTTTCTTCATAGATTTATTGATTTAGATTAGTACTCACTAGTCCTAATCACAACCAAAGGCGGACGAGGGCTAGTGCATTCATTTCTCGACGATAAAGGTAGCAATTTAATATCAAAGCGCACCCACACCAAGCATTAAGTTTATGGTATATAAACCCCGAAGCCTCAACAAAAAGCAAAACCGCCCTCTCCCCACCCTCCCTC # Right flank : GGATGCCCCGCTTGTTGCAGAAGCTGAGCACTCCGCTACTGAGCGAGGGGGCTTCGCCCACGAGGCGTAGCTCACGAATGGAGGTAGCAGGGTGGCGGCTGATGAGCTGGCTCCCCTGTCGGATCACAAGGTCTAGACGCTGAAGCCCTAGCCTTAGCCCCTCGCCCTGCACCACGAGGCAGCCATCCTCATCGAGGACGCTCGAGGGACTAGGGCTCGGCTGAGCTGAGGCATCCGTTCCCCAAGCGAGGATCTGCCCATTGCCCGAGACCGTATGCGTGCCGATATGCACCCAGTGAGCCACAGAGAGCATCAGGGCTGCCACGGGGTCGTAGGGCGTGCGGTAGTGGAGCTGCCCCAAGATGCCCGACATATCGTACTGCCGATGCGCCTTGATCGTGGGGCTCTGCGGTAGGCTCACCTCCGAGAGCATGAGGTCATTGCGCTCGGCGAAGACGAAGGGGGCGACCGACTCGCCCTCAGAGGCAAGGCACTGCGTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGATAATCCTATAGACTGTATTTGTATAGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 84575-84205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAO01000018.1 Porphyromonas sp. COT-239 OH1446 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 84574 32 84.4 36 G..TG...........G.A............. ATTGTAAGCGTGTCGGCAGGCAAGGAGCGCACAGTG 84506 32 100.0 35 ................................ TCACCCTAATGCGTAGCGAGGGTATCAAGGTTAAG 84439 32 100.0 36 ................................ GCTCTACGCTCTGCCTCGTCCGCCTTGTGCTGCGCG 84371 32 87.5 36 ....CC.......C..G............... CCGCTTGGCGCAAGTGGTTCGGCGGACATGTTGATG 84303 32 93.8 35 ...............AG............... CTTGTGTATCTCGAGAAACACCTCTACCTTTGCAT 84236 32 84.4 0 ..AA...A.G.........T............ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 91.7 36 TCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Left flank : CGGCAGGGCACTCCTGCCGCTTAACCTCCTCAATATCCGCAGCTCCTAGGGAGAAGAAGGCCACCTCGGACGAAGACATGAACGCCGAGAGGACGAGTAGCCCCAGGCTAACGGAGAGGGTGATCCACGCAGCCCAAGGGATGGGACCATTGACAACCTCGCTCAGTATGATACTATCCATTTGATGATGATTGCAGGGCTCTTCAGTTGCCCTATTGCCCAACAAAGATAATCATTCCCTGCGCTTGCCCATCCTCATAAGCTCTGCGAAGTGCTCTCCTCTTGGCTCATCATGGCACTTAGGTGCACTTAGGGATCGTAGGGGAAGCTCTCTCAAGCGATCCTCTCCTCTATGGTCTCTCCCCATCTCTCCTCCAATACCCTACCCCCTCCCGAGGAGCTTCCCATTGCCCTAAGAGTCAGCATAAGGTATTTACCTCCAAAATTCTCGAGTCTAAGGCAACTATAGTATGGATATTTTCGTAACTTGCTCTTTACAA # Right flank : AAAAAGGCAGCAATTGCCCCCAACGATACGTACAGAAGCGGACTACCCCCTCGCTGAGGTAGGGCTTCGGATATAAATGGTTACAACGATGAATATTAAGAGACTAAAATCATATCTGCTCGGACTGCTCACCCTCGTGATGCTCCTGGGTAGTGGCGCAGCCTATGCCCAGGAGGCGGCACGAGTATCGCCTCGCTCTATCTTCGAGGCCCTCGAGGCCAGTGGCCCTAACCTCGGCAAGATCACGATCCATCAGAGCGAAGAGGTTCGCCGCCTGGTGGGCAATGCCTCCAGCCGCTACAACCGCATCCTCAGCAAGGAGGGCAATACAGCCCTCGTGTGGGGCTACCGCATCCAGTTCTTCAACGGCAATCAGTCCAACTCGAGAGCGATCGTTCAGGCTCGAGAGCAGGAGATCAAGCTCTCTGAGACCCATCACAACACCTATATTATCTTCAACGCCCCCTTTTGGAGACTACTTGTGGGCGACTTTGCCACCA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCATCCCTCTCGGGATGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA //