Array 1 452470-454389 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZN01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3497 NODE_1_length_578174_cov_88.718618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 452470 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 452531 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 452592 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 452653 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 452714 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 452775 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 452836 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 452897 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 452958 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 453019 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 453080 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453141 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453202 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 453263 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 453324 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 453385 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 453446 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 453507 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453568 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453629 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 453690 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 453751 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 453812 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 453873 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 453934 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 453996 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454057 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 454118 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 454179 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 454240 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 454301 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 454362 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 470522-472059 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZN01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3497 NODE_1_length_578174_cov_88.718618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 470522 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 470583 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 470644 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 470705 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 470766 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 470828 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 470889 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 470950 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 471011 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 471072 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 471133 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 471194 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 471255 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 471316 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 471378 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 471481 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 471542 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 471603 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 471664 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 471725 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 471786 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 471847 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 471908 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 471969 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 472030 29 96.6 0 A............................ | A [472056] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //