Array 1 888-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYC01000093.1 Campylobacter fetus subsp. testudinum strain wqj1204 contig00111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 887 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 821 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 756 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 690 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 624 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 558 30 100.0 36 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 492 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 426 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 359 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 293 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 227 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 156 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 91 30 90.0 0 ......................A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 13 30 98.2 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AATGACAAGATTTGTGTTGAAACACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGG # Right flank : TAGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACAGTTTGCTAATCACAAAGCTTGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 949-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYC01000108.1 Campylobacter fetus subsp. testudinum strain wqj1204 contig00131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 948 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 883 30 100.0 35 .............................. TTAAAATACCTTGACAAGTCTAAAATTTTATACTA 818 30 96.7 36 .............................T TTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 752 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 685 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 620 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 553 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 487 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 422 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 357 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 293 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 228 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 162 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 96 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2300-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYC01000086.1 Campylobacter fetus subsp. testudinum strain wqj1204 contig00103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2299 30 96.7 36 ...............G.............. TAAAAAAGCATAGCTAGGGCGTCTAACTCATCCGGG 2233 30 96.7 35 ...............G.............. TGGGAAGAAAGAGAGTATTATTCTTCTCGTATAAG 2168 30 96.7 35 ...............G.............. AGCTGACTTGATAGCTAGTCGTATTAAAAAAAGAG 2103 30 96.7 34 ...............G.............. TAGATTGATATTTGACGGGAAAAATCTAAGCACA 2039 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 1974 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 1908 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 1843 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 1777 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 1712 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 1645 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 1579 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 1513 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 1448 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 1381 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 1315 30 100.0 36 .............................. ATATCTTTTACATTTTTACCATCTGTTGCTAAAATA 1249 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 1185 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 1119 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 1053 30 100.0 35 .............................. TTTTTTATACTATTTATAGAAGCTTTTTGAGCATA 988 30 100.0 36 .............................. AAGTTCATTCGAGCGATATTAGAGCTCCGCTTCCAA 922 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 856 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 790 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 724 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 658 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 592 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 526 30 100.0 36 .............................. CGTTCAGCTTCCATTGACAAACCACCTTTTAAAATA 460 30 100.0 36 .............................. TTTCTTGCGAGATCATTTACGTGGCATGGGCTTATA 394 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 328 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 262 30 96.7 36 ...............G.............. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 196 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 131 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 35 30 98.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATGAGGCAAGAAAAACAAAAGGAGGTTAGAT # Right flank : CTTGTACACAGGGTATGTAAGATCTGTTGTAATCTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2617-3627 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYC01000083.1 Campylobacter fetus subsp. testudinum strain wqj1204 contig00099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2617 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 2682 30 100.0 35 .............................. AGAGTAAGTGGAGTCTGGTTTAGCAACACAAGAAT 2747 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 2812 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 2877 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 2942 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 3007 30 100.0 36 .............................. TTATAGAAATATTGGAGATAAAATGACAATTAAAAT 3073 30 100.0 36 .............................. TTTACTTTCTCTCCAAACTCTTTTAACTTATCACTA 3139 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 3204 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 3269 30 100.0 36 .............................. TAATTACAATCTAGTAAAAAGCGTAGAAATTGTGTT 3335 30 100.0 36 .............................. CCATCGCTAAACGCCCCACCCGCGGTAGTTAGGTGA 3401 30 100.0 35 .............................. ATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 3466 30 100.0 36 .............................. AGCAGATAGCGCAGTAGATAAATTTAAAAATAGCTT 3532 30 100.0 36 .............................. CAGTGATGATACTGTATATACCCTTATAACAAATGG 3598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 100.0 35 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : ATTTATATTTGCTGATTGCCAAAGAGTAAGATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 859-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYC01000085.1 Campylobacter fetus subsp. testudinum strain wqj1204 contig00101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 858 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 792 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 725 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 659 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 593 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 527 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 461 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 395 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 329 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 263 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 197 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 132 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 66 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.7 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATTTGTGTTGAAACAGGTGCATTCATCGTCGTTTAGTTTCACTATCTCT # Right flank : CTTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 52-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYC01000244.1 Campylobacter fetus subsp. testudinum strain wqj1204 contig00102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 52 30 100.0 35 .............................. GAAGCTAGAGCTAAAGCTTCCTTGCTAAATCCGGA 117 30 96.7 36 .........................T.... TATAATGGACTTTAACCGCACCGCAAAAACAGAACA 183 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : TTGTCATTAGCAAACTTTTATGCCCTCAGCCCAACTTCCTTCTTTTTCGTTG # Right flank : | # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //