Array 1 162691-160648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNF01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162690 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162629 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162568 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162507 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162446 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162385 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162324 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162263 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162202 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162141 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162080 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162019 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161958 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161897 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161836 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161775 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161714 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161653 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161592 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161531 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161470 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161409 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161348 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161287 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161226 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161165 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161104 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161043 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160982 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160921 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160860 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160799 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160738 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160677 29 93.1 0 A...........T................ | A [160650] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181302-179198 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNF01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181301 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181240 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181179 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181118 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181057 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180996 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180935 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180874 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180813 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180752 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180691 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180630 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180569 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180508 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180447 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180386 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180325 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180264 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180203 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180142 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180081 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180020 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179958 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179897 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179836 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179775 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179714 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179652 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179591 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179530 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179469 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179408 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179347 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179286 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179225 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //