Array 1 115416-115583 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRY01000030.1 Streptococcus iniae strain QMA0139 NODE_3_length_115613_cov_105.906_ID_1397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 115416 36 100.0 30 .................................... TCCTTCAAAAAGATGTTGCTACACAAACAT 115482 36 100.0 30 .................................... AGCGAAGCAAATGAACGAACCAGATTGGCT 115548 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : AAAATACGGTTACTCCCTACCGCGTCGTAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 36-6802 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLRY01000031.1 Streptococcus iniae strain QMA0139 NODE_28_length_30860_cov_113.218_ID_6007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36 36 100.0 30 .................................... CTGATTACTTTAAAGACTACACCTACCTTT 102 36 100.0 30 .................................... ATCAGATAATGGCTTGTCAATAACAGACAC 168 36 100.0 30 .................................... ATTCACTTCCGTCTCAATCACATCAGCAAA 234 36 100.0 30 .................................... AGAAATTGCAGAGGTAGAAATGAACCTTAG 300 36 100.0 30 .................................... CATGATTCGCAAACATCATGTCAATAATAG 366 36 100.0 30 .................................... AATTGGTCATTTTCGTCCGATACGGTGACT 432 36 100.0 30 .................................... TGGGAGACATATTTTTCTTAAGAAGCCTAA 498 36 100.0 30 .................................... TTATCAAGTCTGATTATGGCTTATCAGTAA 564 36 100.0 30 .................................... AAACTTATCAGAGATTTAAACAAAGGTAAT 630 36 100.0 30 .................................... GCAAAGATTGACCAATCCATGAGCAGAATT 696 36 100.0 30 .................................... GAATTACTAGACTTGATGGGCAAAGAAACT 762 36 100.0 30 .................................... CGGAAGAGGTGACGGAATGACTGAAGAATT 828 36 100.0 30 .................................... ATTAGGCTTTGACCTAATGACTATTGAATC 894 36 100.0 30 .................................... ACCTTGATCACCATAAATCCCAATTATTGC 960 36 100.0 30 .................................... TGGTGTTTTAAAATACGGTGCGATAACAAT 1026 36 100.0 30 .................................... CATGGAGAGAATGCTCAAAAGTAACGTTTT 1092 36 100.0 30 .................................... TAGCTTTGTTTCCAGTAATCAAGATTACAT 1158 36 100.0 30 .................................... TAGAAGGTATTTACGCACAATTACAGTCAA 1224 36 100.0 30 .................................... AAATAGCAATGACAAAGAGTTACTAGTTGC 1290 36 100.0 30 .................................... TGGTGATCATAAACAAATGTTACACGAGGC 1356 36 100.0 30 .................................... TCAGGAAGTTCAACTGCGTAGTTATCTTTT 1422 36 100.0 30 .................................... TTTCTTTTAGAACAAATAACCCCAAAACAA 1488 36 100.0 30 .................................... GGAAGTGATCTCGTCATCTCCCAACCGACA 1554 36 100.0 30 .................................... TATCAATACCAATAGCAACGTATTGACCTT 1620 36 100.0 30 .................................... CTGTTGCCAAGCGTGGAATACAATCATTGC 1686 36 100.0 30 .................................... CATATAAGTACACATTCTAACGCAGATTAT 1752 36 100.0 30 .................................... TGCTTACTTACCTATTAACTTTAGCAATTA 1818 36 100.0 30 .................................... TTATTTTCTGTCATATCACAGTCCTTTTTT 1884 36 100.0 30 .................................... TACGTACTTCATTTCGATTAAATGTACCAC 1950 36 100.0 30 .................................... TTTGCTTTATCCCAATGGGAGCGGAACGTA 2016 36 100.0 30 .................................... GTCATTGTCAGGAACAAGTGTCATCATTGA 2082 36 100.0 30 .................................... AATCTTTAGGAGGTATTGACACACTATTTA 2148 36 100.0 30 .................................... ATCAGATAATTGCTTGTCAATAACAGACAC 2214 36 100.0 30 .................................... CGTAAATGTGCCAGTACCTGTTAACTCGTT 2280 36 100.0 30 .................................... GAGATGGTTTTGTTTCCACAGAAGCAATCA 2346 36 100.0 30 .................................... TATGTGACAGATTTTATTTACAGCGCAGTC 2412 36 100.0 30 .................................... TTATGCACCGTTAATGCGAGACATTAGGTC 2478 36 100.0 30 .................................... ATCGGACATTGCTTATTACACTACACGTCG 2544 36 100.0 30 .................................... CATTAAAGCTTGATACAGTTGTCCAAGTAT 2610 36 100.0 30 .................................... ACGCTTCGCAACTATGCGTATAAACAGCCT 2676 36 100.0 30 .................................... AACAGAGTTGTATTCTACGAAAAAAGGGAC 2742 36 100.0 30 .................................... TGGTGTATCTACGCTAGGCATAAAACCAAT 2808 36 100.0 30 .................................... AATCGAAGCTACTTTACTTTGAATCGCTCC 2874 36 100.0 30 .................................... TATACGACTATAAACAGTTGCCAGCTTCAT 2940 36 100.0 30 .................................... GTCGAAGTTGAGGTCAGCTTCAAAAATGTA 3006 36 100.0 30 .................................... AGCTTTATAATCAGGAAACACAGGAATAAT 3072 36 100.0 30 .................................... GATTAAGTTCATTTTCCATTGCATTTAGCT 3138 36 100.0 30 .................................... TTTATACGTGACGGAGTGTGCAACTCCATC 3204 36 100.0 30 .................................... TCTTTGCACCATGCTTTATACAACCACCAC 3270 36 100.0 30 .................................... TCCTCTTTTTGTGTCTTAACCGCCAATTTT 3336 36 100.0 30 .................................... ATTTTCGTGCATGCCAATATCAATACGTTT 3402 36 100.0 30 .................................... ATCGTAAGGCAACAGAATATCGTAAGATTT 3468 36 100.0 30 .................................... TTCAAATCTGCAAACCGCCCAACCTTCAAC 3534 36 100.0 30 .................................... AATAAAACAAATCAAAATGAAGTCTTATAC 3600 36 100.0 30 .................................... TTTTGATAACTTCTTGCATACCTTCATTTA 3666 36 100.0 30 .................................... TGGTGATCATAAACAAATGTTACACGAGGC 3732 36 100.0 30 .................................... AGATAAAGAGATTGACAGGACCAAGATTTT 3798 36 100.0 30 .................................... TTGATGCAACGTATGAGAGTATGCTGAGAA 3864 36 100.0 30 .................................... AAGAATGTGGCTATCATTGACCAATCGGAT 3930 36 100.0 30 .................................... TGGATAAACGATAAGAGTAATCACGGATAA 3996 36 100.0 30 .................................... TGATTAACACACTTGACCCAATAAGACCAA 4062 36 100.0 30 .................................... TAGTAATCCAGCTCCTGCTTGCAATAATAC 4128 36 100.0 30 .................................... CTTAGTAACTGTAAGTAATCTTTTTGCGTA 4194 36 100.0 30 .................................... CCAAAAGATGCAGTAAAATTTGGTCCTGCT 4260 36 100.0 30 .................................... CTCTCTTTTTTAATTTATTAATCAAATCGT 4326 36 100.0 30 .................................... GCGATTGACAGAGTAGAAGATGAAATCGAA 4392 36 100.0 30 .................................... TCACCAAGACCACCGTTAGACGTCCTAGTT 4458 36 100.0 30 .................................... TAAAACAGCTAATAATTGATAAAATAGAAA 4524 36 100.0 30 .................................... TGTACAGATTCGATTAATGTTACATTAAAC 4590 36 100.0 30 .................................... TTGAAATTGTTTGTGCTGATGGTTTCCGTA 4656 36 100.0 30 .................................... ATGAGCCATTACAACTGTCTTACCGCTTCG 4722 36 100.0 30 .................................... TCTTCAAAAATGCGATCAACAGTTTCTTCT 4788 36 100.0 30 .................................... CGTAAAAAACTTAATGCTGCAGAAGCTCTT 4854 36 100.0 30 .................................... CGGCAAGCAAATTTTTGAAGTGACTAATAA 4920 36 100.0 30 .................................... GGAGAGGTAGGCTCGTTGAACGATTGCATT 4986 36 100.0 30 .................................... GTTTTGCTAATTTGCTAAACCAACCAAATA 5052 36 100.0 30 .................................... AGAAACTCTCAAACACATTTTGGAAAACTA 5118 36 100.0 30 .................................... CGGAAAATCCTCTTTTGTTTTAGCATTTTT 5184 36 100.0 30 .................................... CGTCTTGACCACAGATACCACATGTGTGTT 5250 36 100.0 30 .................................... CTCCCAAACTTTACCAAATGCAACTCCTGT 5316 36 100.0 29 .................................... CTTTTCGGATTTCTGCTTCAGTTAAACGT 5381 36 100.0 30 .................................... ATGTTACTAAATCTTTTAACACACTACTTT 5447 36 100.0 30 .................................... TTGCTGTGACTGGTTTACCATCAAAAGTCT 5513 36 100.0 30 .................................... AAACCAGATAACAATCATTCCGTCACCTTC 5579 36 100.0 30 .................................... TTCTAATTGGGAAAAACATCAAAACGTAGA 5645 36 100.0 30 .................................... AGATGGTGACGGTTTAACAGCATCTTTATA 5711 36 100.0 30 .................................... AGTTGCTCATAGATGTAGTTAGCTTCAAAC 5777 36 100.0 30 .................................... CACTAACTTGTTTTAGTCTCAATAATTCAT 5843 36 100.0 30 .................................... GGACGTGGAAACGGGTACTTACACTCTTAT 5909 36 100.0 30 .................................... CACAGGTCTTTACGGTGGCACTACTGCGCT 5975 36 100.0 30 .................................... AGCAGCTAAAAACGCTCTGGAAAGTAAAAG 6041 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 6107 36 97.2 30 ..........................C......... CTAAATTAAGATTTTGTACTAATGCTTTGT 6173 36 97.2 30 ..........................C......... AGCTAAGTTTGATTTAGAACGTGCTGCTCT 6239 36 97.2 30 ..........................C......... CTAAGCGAACATTGGAACGTGCGGAAGTAA 6305 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 6371 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 6437 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 6503 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 6569 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 6635 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 6701 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 6767 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 103 36 99.6 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AAAACCCAGCTCGGATATTTTCAGCTAACTGTTCTG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCAGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //