Array 1 66739-66122 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259867.1 Porphyromonas gingivalis F0185 Scaffold1008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 66738 36 100.0 29 .................................... ACCTAATCAAAAAACACAACGCCGAGGGT 66673 36 100.0 30 .................................... ACCTACTTAAAATGATAGACTTCAGACAAC 66607 36 100.0 30 .................................... TTATAGTATCGTGCTATCTTATCGATCGAC 66541 36 100.0 30 .................................... GGCTGGAGATTTCGTAACTCAAGTACTTTA 66475 36 100.0 30 .................................... GGAGGCGAGGAATGAGAACTACAAACAGTT 66409 36 100.0 29 .................................... CGTCTTACTTATAGCCTTGTCATAATCCG 66344 36 77.8 85 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 66223 36 77.8 30 NNNNNNN...................A......... AAGGAGAAAGGGAGTTATATTGATTTGCTT 66157 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 9 36 95.1 37 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGGGATAAATATATAGATTGAAGCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGATATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTTGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGTCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 6872-5873 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259960.1 Porphyromonas gingivalis F0185 Scaffold698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 6871 36 100.0 30 .................................... TTATAATGATTTATTATAATTCGATAAATA 6805 36 100.0 30 .................................... CCAACACCAATGGTCTGAAGCTCTTATTAC 6739 36 75.0 84 ...........................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 6619 36 80.6 30 NNNNNNN............................. ACAACCAGCCTTAGTCTTAAATTGGTTTTT 6553 36 100.0 30 .................................... GAGACTCAGATGAAGAGAGATAAAGCTGAT 6487 36 100.0 31 .................................... CCATTAACTAAGTAATCATCCCGGCGCATAC 6420 36 100.0 30 .................................... CTTTCCTCATCCTGCCAGTGACCTGGCATT 6354 36 75.0 81 ...........................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 6237 36 72.2 30 NNNNNNNNNN.......................... TTTTCGAACTATATGAAATCCCTTGAGCCT 6171 36 100.0 30 .................................... TATTGATTAGTTTTGAAGCTCGTTCTACAA 6105 36 100.0 30 .................................... CCACGGTAGCACTGCCCCAAGCCTCCACGC 6039 36 100.0 30 .................................... ATAATCAGAAGATACAAAATCTATAATATC 5973 36 100.0 29 .................................... TTTTTGAGGTGATTTCACCCGCGGACTCC 5908 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 14 36 93.1 38 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCATGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCC # Right flank : AACCTAACCTTACCATGTACTGGGTGGATTGTTGGGAATACCCTTAGTTAGAAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTAGTTAGAAGGGTGGAGACAACTATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCCGTAAATACCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 14875-14650 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 14874 27 100.0 39 ........................... TCCAGCACAATTTCTCAAGACAGATGGCTAAATTTCGTT 14808 27 100.0 39 ........................... CGGCTTTTGTTTTGCATGAGCCCAGCAGCAACTCCCGTT 14742 27 100.0 39 ........................... TCGAAAACGATCGAGCAAGCGTTTGGACGTTTTCACGTT 14676 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 4 27 100.0 39 TTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ATGGTGCAATTGAAATTTATCAACGACATTTGCGCGTCGCAACAATCGACGGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATGCATTATCCGAAACAATATCTTGTTTCGCCTGACGTTTTAATTCCTGTATGGTGCAATTGAAATGACGATATCATATGGATATCCGGAGAGAAAGACTCGTTTTAATTCCTGTATGGTGCAATTGAAATTATAGTATTTCGAAGACTTCGAACTCGATACCCTGTTGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 14975-15196 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 14975 26 100.0 41 .......................... ACAACAGGGTATCGAGTTCGAAGTCTTCGAAATACTATAAT 15042 26 100.0 39 .......................... ACGAGTCTTTCTCTCCGGATATCCATATGATATCGTCAT 15107 26 100.0 38 .......................... ACGTCAGGCGAAACAAGATATTGTTTCGGATAATGCAT 15171 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================= ================== 4 26 100.0 40 TTCAATTGCACCATACAGGAATTAAA # Left flank : CATGATTAACCTCCGGCGATCTTTGAAATGATTGATAATCAATAAAATATATCAGTCGTCACACCCCTTGGTTTTTCATAGAATCAGACATCGACAACTATGAATGTCTGAATTTTGGGTTTCACCTTTTCGTAAACTCCTCACATTCAAACAGAAAAGCCTATATTTGTAACGGATTTCAATTGCACCATACAGGAATTAAAACGTGAAAACGTCCAAACGCTTGCTCGATCGTTTTCGAATTTCAATTGCACCATACAGGAATTAAAACGGGAGTTGCTGCTGGGCTCATGCAAAACAAAAGCCGATTTCAATTGCACCATACAGGAATTAAAACGAAATTTAGCCATCTGTCTTGAGAAATTGTGCTGGAATTTCAATTGCACCATACAGGAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCACCATACAGGAATTAAAACCGTCGATTGTTGCGACGCGCAAATGTCGTTGATAAATTTCAATTGCACCATACAGGAATTAAAACGGTAAAACATGACGGAAAAATCGTCGCAATTATCTTTATTTCAATTGCACCATACAGGAATTAAAACGACACCGGGTTTATTTTAGGTGTCACGGCATCCTTGATTTCAATTGCACCATACAGGAATTAAAACGTTGCGCTTATTGTCGCAGCAGGCATACTGTTATTCAATTTCAATTGCACCATACAGGAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATTGCACCATACAGGAATTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 15590-15294 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 15589 31 87.1 36 NNNN........................... TGAATAACAGTATGCCTGCTGCGACAATAAGCGCAA 15522 31 100.0 35 ............................... CAAGGATGCCGTGACACCTAAAATAAACCCGGTGT 15456 31 100.0 36 ............................... AAAGATAATTGCGACGATTTTTCCGTCATGTTTTAC 15389 31 100.0 34 ............................... TTATCAACGACATTTGCGCGTCGCAACAATCGAC 15324 31 87.1 0 G...........................NNN | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 94.8 36 CGTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CCTGTATGGTGCAATTGAAATTCTTACTCAGCCGACGCCAAACGAAGTTGACAGTGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATGGTGCAATTGAAATCAGCGCAAAACAGCTGATATTTAACATCCGATACGTTTTAATTCCTGTATGGTGCAATTGAAATGTCAAAAACAACAGCAGAAAAAGATGAATCCGGGTCGTTTTAATTCCTGTATGGTGCAATTGAAATATTACGCCCGTAAGCGTTGTAATCATCTGTATGACATGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATGCATTATCCGAAACAATATCTTGTTTCGCCTGACGTTTTAATTCCTGTATGGTGCAATTGAAATGACGATATCATATGGATATCCGGAGAGAAAGACTCGTTTTAATTCCTGTATGGTGCAATTGAAATTATAGTATTTCGAAGACTTCGAACTCGATACCCTGTTGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATGGTGCAATTGAAATTCCAGCACAATTTCTCAAGACAGATGGCTAAATTTCGTTTTAATTCCTGTATGG # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 4 15910-15683 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15909 30 90.0 34 NNN........................... CAGCGCAAAACAGCTGATATTTAACATCCGATAC 15845 30 100.0 36 .............................. GTCAAAAACAACAGCAGAAAAAGATGAATCCGGGTC 15779 30 100.0 37 .............................. ATTACGCCCGTAAGCGTTGTAATCATCTGTATGACAT 15712 30 90.0 0 ...........................NNN | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TATGGTGCAATTGAAATATTAAATATAAGTTCACAAAGAAAACTCCTGCCTGTGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATGGTGCAATTGAAATATTTCGTATTTCGTCCACAAAACATTAGCACATGCCGTTTTAATTCCTGTATGGTGCAATTGAAATCTGCCGTTACCCGCCCTGTATCTTCCCAGATATGCACCGTTTTAATTCCTGTATGGTGCAATTGAAATTCTTACTCAGCCGACGCCAAACGAAGTTGACAGTGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATGGTGCAATTGAAATTGAATAACAGTATGCCTGCTGCGACAATAAGCGCAACGTTTTAATTCCTGTATGGTGCAATTGAAATCAAGGATGCCGTGACACCTAAAATAAACCCGGTGTCGTTTTAATTCCTGTATGGTGCAATTGAAATAAAGATAATTGCGACGATTTTTCCGTCATGTTTTACCGTTTTAATTCCTGTATGGTGCAATTGAAATTTATCAACGACATTTGCGCGTCGCAACAATCGACGGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTAT # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 5 16007-16229 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 16007 25 100.0 39 ......................... AACACTGTCAACTTCGTTTGGCGTCGGCTGAGTAAGAAT 16071 25 100.0 43 ......................... AACGGTGCATATCTGGGAAGATACAGGGCGGGTAACGGCAGAT 16139 25 100.0 41 ......................... AACGGCATGTGCTAATGTTTTGTGGACGAAATACGAAATAT 16205 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 4 25 100.0 41 TTCAATTGCACCATACAGGAATTAA # Left flank : TACAGGAATTAAAACGTTGCGCTTATTGTCGCAGCAGGCATACTGTTATTCAATTTCAATTGCACCATACAGGAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCACCATACAGGAATTAAAACATGTCATACAGATGATTACAACGCTTACGGGCGTAATATTTCAATTGCACCATACAGGAATTAAAACGACCCGGATTCATCTTTTTCTGCTGTTGTTTTTGACATTTCAATTGCACCATACAGGAATTAAAACGTATCGGATGTTAAATATCAGCTGTTTTGCGCTGATTTCAATTGCACCATACAGGAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCACCATACAGGAATTAAAACACAGGCAGGAGTTTTCTTTGTGAACTTATATTTAATATTTCAATTGCACCATACAGGAATTAAAACGGCGCAATGGTTGTGCTATTGTAATCATACTGAAAGATTTCAATTGCACCATACAGGAATTAAAACGTGGATATTATTCATAAAACAATAAAGAAATGATTTATTTCAATTGCACCATACAGGAATTAAAACGGCTGTCGAAATGGAGTTGCGTCGCTTGGGCTATATTTCAATTGCACCATACAGGAATTAAAACGTGACTTCACGAACTTGACGGCATCGACCTTGACCCATTTCAATTGCACCATACAGGAATTAAAACGGCGACGTTGCGCGTGCTGAGCGACACAGACAGGCGATTTCAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATTGCACCATACAGGAATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 6 17143-16393 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 17142 31 90.3 33 NNN............................ TCAAGAAGGAGTTCATCCACCGCACCGTCAGCG 17078 31 100.0 35 ............................... CAGAACAACGAGAGTATAACAGTATTAAGTTTATT 17012 31 100.0 33 ............................... GCGACCAAGAACGCTCTAATTATGCCATTCATT 16948 31 100.0 35 ............................... TTGAAAATCGATACGAGCAGCATCGACGAAGTGCG 16882 31 100.0 35 ............................... TCGGGGTATATCCATCACTCCTTATAGCGGCCTTT 16816 31 100.0 34 ............................... TCGAGATTCGCGAATAGCCGAATATCTCTGAGCA 16751 31 100.0 35 ............................... CGCCTGTCTGTGTCGCTCAGCACGCGCAACGTCGC 16685 31 100.0 35 ............................... GGGTCAAGGTCGATGCCGTCAAGTTCGTGAAGTCA 16619 31 100.0 33 ............................... ATAGCCCAAGCGACGCAACTCCATTTCGACAGC 16555 31 100.0 35 ............................... AAATCATTTCTTTATTGTTTTATGAATAATATCCA 16489 31 100.0 35 ............................... CTTTCAGTATGATTACAATAGCACAACCATTGCGC 16423 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 12 31 99.2 34 CGTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ATGGTGCAATTGAAATTCTGAGTGCCAAGCCTATACGATAGCGTATGACTTGGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATCGAGAGTATAATAGTATTAAATTTATACTCGCTCACGTTTTAATTCCTGTATGGTGCAATTGAAATTCTAAATAAAAAGTTTTAGCCCTCAATATCTTTCCGTTTTAATTCCTGTATGGTGCAATTGAAATATACGCACGATGTAAAAGATAATAAGATTTATCGTGAGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATTAAATATAAGTTCACAAAGAAAACTCCTGCCTGTGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATGGTGCAATTGAAATATTTCGTATTTCGTCCACAAAACATTAGCACATGCCGTTTTAATTCCTGTATGGTGCAATTGAAATCTGCCGTTACCCGCCCTGTATCTTCCCAGATATGCACCGTTTTAATTCCTGTATGGTGCAATTGAAATTCTTACTCAGCCGACGCCAAACGAAGTTGACAGTGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 7 17466-17238 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17465 30 93.3 36 NN............................ CGAGAGTATAATAGTATTAAATTTATACTCGCTCAC 17399 30 100.0 35 .............................. TCTAAATAAAAAGTTTTAGCCCTCAATATCTTTCC 17334 30 100.0 37 .............................. ATACGCACGATGTAAAAGATAATAAGATTTATCGTGA 17267 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTCCTGTATGGTGCAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTCCTGTATGGTGCAATTGAAATCTTTTTCCCTCCTCAAGGTCTTTAATGTACCCGTACGTTTTAATTCCTGTATGGTGCAATTGAAATTGATTATCAAATAACAAACTACTATCGAAAAGACGTTTTAATTCCTGTATGGTGCAATTGAAATAGATGCGAATATGTACAGACTACTTGATGCTTTCGTTTTAATTCCTGTATGGTGCAATTGAAATTCTGAGTGCCAAGCCTATACGATAGCGTATGACTTGGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATTCAAGAAGGAGTTCATCCACCGCACCGTCAGCGCGTTTTAATTCCTGTATGGTGCAATTGAAATCAGAACAACGAGAGTATAACAGTATTAAGTTTATTCGTTTTAATTCCTGTATGGTGCAATTGAAATGCGACCAAGAACGCTCTAATTATGCCATTCATTCGTTTTAATTCCTGTATGGTGCAATTGAAATTTGAAAATCGATACGAGCAGCATCGACGAAGTGCGCGTTTTAATTCCTGTATGGTGCAATTGAAATTCGGGGTATATCCATCACTCCTTATAGCGGCCTTTCGTTTTAATTCCTGTATGGTGCAATTGAAATTCGAGATTCGCGAATAGCCGAATATCTCTGAGCACGTTTTAATTCCTG # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 8 18302-17627 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================================================================== ================== 18301 31 90.3 35 NNN............................ AGTATGCATCCGAGATCGCAGCAGCACAAGGCAAT 18235 31 100.0 35 ............................... ACGACGTGAAGAAATCACTTAGTGAACTAATGAAT 18169 31 100.0 35 ............................... AATGCAGATACTATTGTGCAGTTCTTAGAATTATC 18103 31 100.0 33 ............................... TTGTGCTATTTACGAATATCTAATGCAGATACT 18039 31 100.0 35 ............................... TTCAGATTCTTTACAGAAGAAGACGCCGAACGACT 17973 31 83.9 91 A..........................NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 17851 31 83.9 35 NNNNN.......................... CTTTTTCCCTCCTCAAGGTCTTTAATGTACCCGTA 17785 31 100.0 33 ............................... TGATTATCAAATAACAAACTACTATCGAAAAGA 17721 31 100.0 33 ............................... AGATGCGAATATGTACAGACTACTTGATGCTTT 17657 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =========================================================================================== ================== 10 31 95.8 41 CGTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTGTATGGTGCAATTGAAATCGCCGCCCGCGACAATGCCCTTCGCGACGTTCTTGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATTAGATGAGGATGCCATGCGGGAAATACAGAAAGAACGTTTTAATTCCTGTATGGTGCAATTGAAATCAGAACAACGAGAGTATAACAGTATTAAGTTTATTCGTTTTAATTCCTGTATGGTGCAATTGAAATAAGACTGTTAAAATTTTGTATCTTATGGAAAAATTGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTGAGTGCCAAGCCTATACGATAGCGTATGACTTGGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATCGAGAGTATAATAGTATTAAATTTATACTCGCTCACGTTTTAATTCCTGTATGGTGCAATTGAAATTCTAAATAAAAAGTTTTAGCCCTCAATATCTTTCCGTTTTAATTCCTGTATGGTGCAATTGAAATATACGCACGATGTAAAAGATAATAAGATTTATCGTGAGTTTTAATTCCTGTATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 9 18399-18620 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 18399 25 100.0 40 ......................... ACAATTTTTCCATAAGATACAAAATTTTAACAGTCTTATT 18464 25 100.0 41 ......................... ACGAATAAACTTAATACTGTTATACTCTCGTTGTTCTGATT 18530 25 100.0 41 ......................... ACGTTCTTTCTGTATTTCCCGCATGGCATCCTCATCTAATT 18596 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 4 25 100.0 41 TCAATTGCACCATACAGGAATTAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTGCACCATACAGGAATTAAAACTAGTCGTTCGGCGTCTTCTTCTGTAAAGAATCTGAAATTTCAATTGCACCATACAGGAATTAAAACGAGTATCTGCATTAGATATTCGTAAATAGCACAAATTTCAATTGCACCATACAGGAATTAAAACGGATAATTCTAAGAACTGCACAATAGTATCTGCATTATTTCAATTGCACCATACAGGAATTAAAACGATTCATTAGTTCACTAAGTGATTTCTTCACGTCGTATTTCAATTGCACCATACAGGAATTAAAACGATTGCCTTGTGCTGCTGCGATCTCGGATGCATACTATTTCAATTGCACCATACAGGAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCACCATACAGGAATTAAAACAAGAACGTCGCGAAGGGCATTGTCGCGGGCGGCGATTTCAATTGCACCATACAGGAATTAAAACGAGCAAGACGTCGGCAGAAGACATAAAGGAGTCGGATTTCAATTGCACCATACAGGAATTAAAACGTCATTTGAGTCGGATTAGAGTAGTTACCAACGATAATTTCAATTGCACCATACAGGAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCACCATACAGGAATTAAAACACGTATCCGACAAGGTGGCAAACCTGTACGAGGATAATTTCAATTGCACCATAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATTGCACCATACAGGAATTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 10 18939-18718 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 18938 26 100.0 40 .......................... TATCGTTGGTAACTACTCTAATCCGACTCAAATGACGTTT 18872 26 100.0 39 .......................... CCGACTCCTTTATGTCTTCTGCCGACGTCTTGCTCGTTT 18807 26 100.0 38 .......................... CGCCGCCCGCGACAATGCCCTTCGCGACGTTCTTGTTT 18743 26 88.5 0 .......................NNN | ========== ====== ====== ====== ========================== ======================================== ================== 4 26 97.1 39 TAATTCCTGTATGGTGCAATTGAAAT # Left flank : ATGGTGCAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATTCCTGTATGGTGCAATTGAAATTCCGCTGAAACGTTCGTTATCGGCGTGGCAATGTTTCGTTTTAATTCCTGTATGGTGCAATTGAAATTGCGAGAGGATCCCGAGCTCATGAAGCAGTACAACGTTTTAATTCCTGTATGGTGCAATTGAAATAACTTAAATGGATATCTCTCTATATTATCTATTCGTTTTAATTCCTGTATGGTGCAATTGAAATTATCCTCGTACAGGTTTGCCACCTTGTCGGATACGTGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATTAGATGAGGATGCCATGCGGGAAATACAGAAAGAACGTTTTAATTCCTGTATGGTGCAATTGAAATCAGAACAACGAGAGTATAACAGTATTAAGTTTATTCGTTTTAATTCCTGTATGGTGCAATTGAAATAAGACTGTTAAAATTTTGTATCTTATGGAAAAATTGTTTTAATTCCTGTATGGTGCAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATAGTATGCATCCGAGATCGCAGCAGCACAAGGCAATCGTTTTAATTCCTGTATG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 11 19039-19324 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259972.1 Porphyromonas gingivalis F0185 Scaffold895, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 19039 24 100.0 42 ........................ AACACGTATCCGACAAGGTGGCAAACCTGTACGAGGATAATT 19105 24 100.0 40 ........................ AACGAATAGATAATATAGAGAGATATCCATTTAAGTTATT 19169 24 100.0 41 ........................ AACGTTGTACTGCTTCATGAGCTCGGGATCCTCTCGCAATT 19234 24 100.0 43 ........................ AACGAAACATTGCCACGCCGATAACGAACGTTTCAGCGGAATT 19301 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 5 24 100.0 42 TCAATTGCACCATACAGGAATTAA # Left flank : CCATACAGGAATTAAAACGTTCTTTCTGTATTTCCCGCATGGCATCCTCATCTAATTTCAATTGCACCATACAGGAATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATTGCACCATACAGGAATTAAAACAAGAACGTCGCGAAGGGCATTGTCGCGGGCGGCGATTTCAATTGCACCATACAGGAATTAAAACGAGCAAGACGTCGGCAGAAGACATAAAGGAGTCGGATTTCAATTGCACCATACAGGAATTAAAACGTCATTTGAGTCGGATTAGAGTAGTTACCAACGATAATTTCAATTGCACCATACAGGAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATTGCACCATACAGGAATTAAAACTTCAGTAGTGCGCTGACAACAAGCGCGCGCATAAATTTCAATTGCACCATACAGGAATTAAAATGTATCCATTATACTACTCCCAAAAACTGACAACTAGTTTCGGGGTTATTTGGCTTGTTTTTTAGGCATAGGGGATATCATACAAATAAAAAAATAGACTAAGGGCTGTACCAAAGGGGAGAGTCCCTTGTGGTGCAGCCCTTGATTTATCTTAATCTATAGCCGAAAAAGCAGATCAGACACCGAGGTCGTGGAGGATGGTAGCAATCTTTTCTTCTGCTACTATATAGGCCCGGTCTAATTCCTGCTCATTAGCGACCGAGAAATGAACTCCGATGTAAAACTTGATTTTCGGTTCAGTACCCGAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATTGCACCATACAGGAATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //