Array 1 75094-78953 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNCN01000020.1 Comamonas sp. KCTC 72670 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 75094 36 100.0 35 .................................... ATGTATTACGTGTCTGTGAAGGACGATGATCACGC 75165 36 100.0 37 .................................... CCTCCAGCGACGCGACATGCCGGAGATCGGAGGTCCA 75238 36 100.0 38 .................................... AGGTCCACCGCGTCGGCGACAGGCGCCGACTCCACGGA 75312 36 100.0 35 .................................... AGCGGGTGGCGCCTGGACCACTCGCCCTGGCTGGC 75383 36 100.0 38 .................................... CCCGTCACCTGATAGAGCGAGTCCACCAGTTCGCGCCG 75457 36 100.0 34 .................................... CTTCTTGATTCCCGCGCCTCTTCCAGGAGTTGAA 75527 36 100.0 37 .................................... AGTCGACCGTCAGCCAATTCGGCTTGCAGCATGGTCG 75600 36 100.0 35 .................................... AGCTCCCTGTCCTGGCCCAGTTTCGGGAGGCGCTG 75671 36 100.0 39 .................................... CTCGAAGTCATCGCCGGTGAGGGCCGCCGCTACATGCTG 75746 36 100.0 35 .................................... TCATCTCTCTGGGCCAGGGCGGCGCGCAGGCGTCT 75817 36 100.0 35 .................................... TTCATGGCGCGCGATGGTCACCTTCCCGGAGTCGG 75888 36 97.2 36 ...............................C.... GTGGGAGCAGCGGAGAGAAGCGCGACAAGGGCAGTA 75960 36 100.0 32 .................................... AGTTCGACCCTCAACACGTTGGTCCCGTTTCC 76028 36 100.0 37 .................................... TGGTGGCCTGCCCAGTTCGCGCCGTTCGCCGCCTGCG 76101 36 100.0 37 .................................... CACGCCTTCTCAATGGCGCTCAGTTCGTAGTTGGCGG 76174 36 100.0 35 .................................... CCGGCTCCGGGAGACGAATAGCGGGGGTTAGGCGG 76245 36 100.0 36 .................................... AAGTTGTTGGAGAGGCTGTACACCTCCGCCTGGGTG 76317 36 100.0 35 .................................... AAGCGTACCGACGACCAGTTTCCCAGCCACCCCTA 76388 36 100.0 39 .................................... TGAACGTTCCAGATACGGGATCATATGTTTCTCTTTCAG 76463 36 100.0 38 .................................... GAGCTGTCTTACGCCGCCCGGCTGACACGCCCGATCGC 76537 36 100.0 37 .................................... GTTTTGGCGGTGGACTTCTCGGCGGCAGGGGTCTGGG 76610 36 100.0 35 .................................... CTGAATTCAGCGTTCACGCCGTACTCCTCTGCGTC 76681 36 100.0 36 .................................... CTTCCAAACGGGACGTTGTCCACCTGGACGGTGATG 76753 36 100.0 38 .................................... ACGGTGGCACTCACTACAGCCACGTTGAAGGCGCGGTC 76827 36 100.0 38 .................................... ACGGTGGCACTCACTACAGCCACGTTGAAGGCGCGGTC 76901 36 100.0 35 .................................... CGGCCAATCTGCCACATCGCCTCGGGGTAGCCGGA 76972 36 97.2 33 .C.................................. AGGCTGCGCTCGCGGCGGGCATTGCGAAGGAGT 77041 36 100.0 37 .................................... CGTTCATGGCTTCTTCACCAGACCGAGCCGCTTCCGG 77114 36 100.0 36 .................................... CAGTACCGCAACAGGCGCTCGCCCGTCTCGTGGTTG 77186 36 100.0 37 .................................... CTTTCCTGCATCTCCGGCGTGCGGATGGCGTGCGTCA 77259 36 97.2 36 ...............................C.... GCAGCGAACGACGAACGAATCGCCCGTGTTCGGGCT 77331 36 100.0 36 .................................... GTGCCAGCCACATCCAGGCCATGTACCGCGTCCGTC 77403 36 97.2 35 ...........................A........ ACAACATAGGCCATGACCATCTTCCGGCTCTTGTA 77474 36 100.0 34 .................................... GCGTCGCGCGGCGACACCGGCGCGCCCTCGGAGA 77544 36 100.0 34 .................................... GCCCGCTGGCCCGGAAGGCCTTGTCAGCATTCAC 77614 36 100.0 41 .................................... GTGTCCGGCTTGACGCCGGCCTCCTTCTCCCAGGTGCTGTA 77691 36 100.0 39 .................................... CGCTCAAGCTTCAGCACACGAGAGATGCGTTCGGTCAGC 77766 36 100.0 37 .................................... AACGGGTGGGTGTAACTCGGGTAGATGGGAGCCTGCG 77839 36 97.2 36 ......T............................. CTACCGTCCACCACGAGGACGGAGGTGGCGTCAGGC 77911 36 97.2 38 ..........................T......... TCGATGACCCCGGGGCTCAATTTGTTGAGGATGATCCC 77985 36 100.0 34 .................................... GAGAGTCCTGGGTCCTGAGATTGCTGTATGAGCA 78055 36 100.0 37 .................................... TCGAAAGCGTGCTCGGGGTCGGCGGCCAGCTCCAGCT 78128 36 97.2 35 ...................................G TGGCTCAGCTCCATCACCAGGCCGGGCGGGGTGGT 78199 36 94.4 38 ........T....................C...... TGTGAAGGCACGCCGCACGAACCAGCCGGATAGTAGAT 78273 36 100.0 37 .................................... ATGTTGGCGTTGCTGCGCCAGTACGCGACGAGGTTCA 78346 36 97.2 28 ...............................C.... TGGGCGCGCGGCGGGGGAAAAGCCCGGC Deletion [78410] 78410 36 97.2 34 ................A................... TTGCCGACGTCCCAGTACATCGTCAGCAGGGCGA 78480 36 97.2 38 .........A.......................... GGCATTGCCTCTATCTCGTCGCATGGGATTCCCAACGG 78554 36 100.0 40 .................................... ACTCTCGCGCACGCCTTGGCCGCAAACATGAGGGCGGCCT 78630 36 94.4 34 ..A..A.............................. GCGAACAGGCGGGACTGGTTGTCACGGAAGTAAA 78700 36 97.2 37 ...........................A........ TTACCTGTACTCACCATGATGTCGATCACGCTGTCGG 78773 36 94.4 36 ................C.....C............. CGTCAGTTCAACGCGCGTTTCGACTCGGACGGGAGC 78845 36 97.2 37 ......................C............. AGTCGCAGCGCGTCCAGTCGCACTTCGTCGAGCGGCA 78918 36 83.3 0 .................TTGA..........CT... | ========== ====== ====== ====== ==================================== ========================================= ================== 54 36 98.8 36 GTCGCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : CAGGCGGGTGGTGTGCATCCAGGGGCGGCGGGTGGTGGGGTATGCCCTTGAATTGCAGGGCCTGTCGAAAGAGGACTCGCTGCGTGTCCAGACGCGAGGGATGGGCGGACGTCGCCACATGGGCTGTGGCCTGTTCCTTCCGCCTCGCCCCGCGGTACGAGGCGTCGTCCCGCTTCGTGGGGGGCTCGCGACCGCCGCGTGAGCCCAGGTGCCGTTGTGGCCTGGCAGGGGCCCTGCGGGGATTGAAGGGCGCGAAAGACATTCAAGCACCTCGCCGTGGCGGAGGGCTGTCACGGCGAAATGGGCGAATTCCCCAGGGAGTTCATGGGGTTGTGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGACGAGTGATTTCCGTGGGTTCGGAGTGCTGGGTAGGGTCTGGACCTGACAACCTGGGGGCAGGTGGGGGAGGTGCTTGAAAAGAGGGCTGTAAGTCCCTGGAGTTGCTGGGGAATTCGGGCGGGCT # Right flank : CATCCGGAAACTTGGAGCCCGTACTCCGCTTGTCGAGAGCCTGCCCGCAGTACACGGCCTCCATGCCCGAGCACCAGGTCTACGAGTTCGTGACGCTGGACCGGCCATTGACGGAGAATCAAATGGCGGAGTTCCGTGCCAGCTCGACCCTGGCCAAGATCACACCGAGCCGGTTCTGGAACGAATACCACTGGGGCGATGACGGACTTCCAAGCTTCAATCGCGATGCGGGCCCTGCCAGGTCCGCCATCTCGTGGCACCCCCCTGAAAGTGTCGGCCTCTGGGCAGGCCCTCGTTGCGGCTGGCGCCCACCGTCAAGGGTGACCTGTCGCGGGCGGTGGTCGAAAGTATATTTCCACGGATGCCCGTCGTGTTCCTTCCCAACACCGAAGCGCTTTTCCTTTGGGGGGGCGAGCCGCTACCCCGTTCGCTCAGCGGCTTGTCGAGGGCGGGTGTCCGTGCCGCTGTCCCGCTCGTGACACCCAAGGGGTTGCGTCAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 105194-107949 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNCN01000020.1 Comamonas sp. KCTC 72670 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 105194 36 100.0 33 .................................... GAGCTGCTGCGCGGCAAGGTCTGGATTGCTCGC 105263 36 100.0 35 .................................... GAGATTGACGCCACCTGTTTGGTGACGCGCTCCAC 105334 36 100.0 34 .................................... CGGGAAGTGGCACATGCGTTGTGCGACGGCATCC 105404 36 100.0 36 .................................... CTGGGCTTCATGTAGTGTTGCTCCGTGTAGATTACT 105476 36 100.0 33 .................................... TAATCATGGCTTGCGGGAACGCCCTGGGTTTGA 105545 36 100.0 37 .................................... CAAGCTCGCATACCAAAAATCGACATGCCCAGGTGCC 105618 36 100.0 34 .................................... AAGTTGAGGTAGCCGTTGTGATAGGCGTAGAGGG 105688 36 100.0 35 .................................... TTCGCGCCGGCCGCCGTCGGGTAGGAGCGCGCGAG 105759 36 100.0 35 .................................... AAGCCCTCGGACGCCCTGTCGATGATGCCCAGGGC 105830 36 100.0 36 .................................... TCCAACCCCGAGCCGGCGTACTCGCCAATCTTCGCG 105902 36 100.0 37 .................................... AATACTCCACGATACTCTCTTCAGCCGAGAAATAGCC 105975 36 100.0 36 .................................... GCACCCGCGACAACCCCAATCCCAGTACCAGCCAGG 106047 36 100.0 37 .................................... GCAGGGTGCGGGAAGTATCGGCCGCCCTGTGCCTCTG 106120 36 100.0 38 .................................... ACCTCGAACGTGCCGGGCACGAGGAAACCGGAAGTCTG 106194 36 100.0 38 .................................... CTTGAACGGGGTGTTGAAGTGCAGCAGGTACACCGTCC 106268 36 100.0 34 .................................... CGGCGGCAACGTCGTTCCGTTGCCGATTTACACC 106338 36 100.0 41 .................................... CATCATCCGGAGCATCGCTCCAGTCCACGCTTTGGGTGTAC 106415 36 100.0 35 .................................... GTGTTCTTTTCCGACGGAGGCTGACACGCCTCGCT 106486 36 100.0 34 .................................... GACTCGTTGGTGACGAGTCGCTTGGCCGTGAGAG 106556 36 100.0 35 .................................... CCCGGGTTGCCCGGGTAGCGAACGCGCATGATGGT 106627 36 100.0 34 .................................... CCACCGCTCACTTCGAAGGCCTCATTGGACATGG 106697 36 100.0 35 .................................... CAGGCCGATCTTCTGCGCCTTCTCCAGCTTGAGCT 106768 36 100.0 36 .................................... TGCTCAGCCAGCGCCCGCGTTTGCACCGCGCCGTCC 106840 36 100.0 35 .................................... ACATGGACGGCGCCTCCCACCAACAGGTGGCCCTT 106911 36 100.0 34 .................................... GACTCGGGCACATCCGCCGGTACTTCCAGCACGT 106981 36 100.0 34 .................................... CAGAGGGAGATGAAGCGGAGCACCTCGGTAAGGT 107051 36 100.0 36 .................................... CGATGAGGTTTACGACCCCCCAGTCGGCCAGGAAGA 107123 36 100.0 34 .................................... GTGTAGCCCTTCATCGCCTTCTGGGCCTGCTGCA 107193 36 100.0 35 .................................... ATGGTGCGCAGTGTCACCGGGTCCTTCGCCCGCTT 107264 36 100.0 38 .................................... ATCTTCGCCACGCCGCTGATGAAAGAGCAGTACCCGCG 107338 36 100.0 37 .................................... TACTCCACGTACAGGTACGGGTAGCCTACCACGTAGT 107411 36 100.0 35 .................................... CCGGAGCTGGCGCCGCGCTTCGAGTGGCCCGGCAA 107482 36 97.2 34 ...........T........................ TTGCTGTTTGGGGCCCATCCCATAAGTTGCCCCA 107552 36 100.0 34 .................................... CGTTCAAGCTCCGAGGACATGCCTACGGGTGGAG 107622 36 97.2 36 ..................................G. CCTTCCTCCTCCTCGCCCCAGTTGATGGGGGTCTCC 107694 36 94.4 38 ................................T..T ATGGTGCCCCGCCTGGCACCCCGCTCGCGGAGCTTGGT 107768 36 94.4 37 ...........T....................T... GCTCCCGAGCAGGTTCGCGAGGTGAAGGAATACTGGT 107841 36 97.2 37 ..........................T......... GGCACGTGCCGCTCCGGAGACGTCTCCAGCGGGCCCA 107914 36 88.9 0 ................................AAGT | ========== ====== ====== ====== ==================================== ========================================= ================== 39 36 99.2 36 GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Left flank : GGACCCGAAGCGGTGGCGGAAGGTGTATTCCCTGCTGAAGGGCTATGGGGAGTGGTTGCAGCTCTCGGTGTTCCGCTGCTCGTTGACGGACCGGGACCGGGAGAAGCTGCGGTGGGAGCTGTCGCGGCGGATGGAGGCCGTGGATACGTTGCTGGTGATTGGACTGTGTGGAGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGGAGGAGGACTGGCCGGAGGAGCCCGCACCTTTCAAGGTGTTGTGAAGTGAGAGACAATCAAGCACCTCGCCGTGGCGGAGGCCCGTGACGGCGAAAGTGGTGGATTCCCCTGTGAGTTCATGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGAGTTGGCGTTCTTGGGTAGGGCCTGGGAAGGCCAACCTGAGTGGAGGAGGGGGAGGTGCTTGAAAAGAGGGCTGTAAGTTGTCGGAATTGCTGGGGGATTTGGGCAGGCT # Right flank : TGCAGACATGGAGATAGGGTCTGCTCATGGCTTTATGTCGTTGCTTGTTGCGACGTTTCGGGCACTCCTGGGCACGTACGCAGTTACCGCGTGCGAGGCATCAAATGCTCCTGGACGACTTGCTCCAGTGCTTGCACCTCGGTGTCAGTGAGGGCGCCGAAGTACCGGGTCCGCTTGCTCTTCGCCAGGCGGCCGCCGTTCTGGAGGCAGAACTGGACGAAGCGGTTGCGAGCGGCATCGGACAGTTCGACAAGGTCGTCCATCTTCTCTCGGGCTTTGCGATAGCGCACGAGGAAGTCCAGCTCATCACGAAACTCCGTGTGGAGGGTCTCCTCCGTCCATTGGTAGAGGTCCTCCGCCATGCGTGTGAAGTCCACGTAGCGGTAGAAGCCGCTGGTCCGCCCGTTCACGGAGACGCTCCCATCCGCGTCCACCGTGTAATCCAGCAGGTTCATCAGCGGCTTTGAGAAGGACTCGAGGCACGCATCGTACTGCGCCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 284393-288476 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNCN01000005.1 Comamonas sp. KCTC 72670 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 284393 37 97.3 36 ...................A................. GCGCACTTGCGGCGGGTCGTCTTCCAGTCCTTCGGC 284466 37 97.3 32 ...................A................. GACAAGTCGGCGAAGGAGTTGGAGAAGCAACT 284535 37 100.0 33 ..................................... GTCTCGTCAGGGCACTGGACCACCGACAAGGCC 284605 37 100.0 32 ..................................... CCCTTTCGGGACTGCGTGCGCCACGGAGACGG 284674 37 100.0 35 ..................................... TTCGACCGAGAGGGCATCCGGCAGCAGTGGTTGGA 284746 37 100.0 34 ..................................... GACTTGGGGCAGGTTCAATGGCATGCGCCGAGGA 284817 37 100.0 34 ..................................... GTTCGTCATTCGCTGCCATCTCCGCGCCCCACGT 284888 37 100.0 36 ..................................... TGAATTGCCTCGGCCCAGCGCTTGGCCTCTTCCGTC 284961 37 100.0 33 ..................................... TTCGACGACGTGCGCCTGCAAATGCGCGCGCTG 285031 37 100.0 38 ..................................... ATGGGCGTACCGGTGGTGCTCGATGGCGGCATCGGCGG 285106 37 100.0 33 ..................................... ATGCTTGACGGAATTAAGGCTAGCCCCAACCTC 285176 37 100.0 35 ..................................... CACCCTCGCTATTGAAAGGAAATCAACCGGAAAAG 285248 37 97.3 33 ...................A................. CTGCTCCAACGTGGCCACGCGCTCGCGGAGGCG 285318 37 100.0 33 ..................................... GTCAAGTCCGGCGCTCCGGTGAATCTTTTCGAG 285388 37 100.0 33 ..................................... CACTTGATGCGCTCCGATTGCAGGGGTTCAAGG 285458 37 100.0 34 ..................................... CTTGACGGCGACTTCATCGAGGTTGCCCAGCGGA 285529 37 100.0 34 ..................................... TGGTGGCGTCCCGGGCTTTGTGCTTGCTGCCTTG 285600 37 100.0 32 ..................................... GAAGAGGCGACGCCCCGGCGCCAGGACACGGC 285669 37 100.0 33 ..................................... AGCAAATACGGGCTGGCGCGTACGGGAGGAACC 285739 37 100.0 32 ..................................... CGCATCGGGCGCCGCGCGAACGCCCCGCTGAC 285808 37 100.0 33 ..................................... AAGATCCGCGTCTTCAACGCGCGGAAGCAGCTC 285878 37 100.0 32 ..................................... CAAGCCGGCGCTGGAGCAGATCGGCGAAGCCC 285947 37 100.0 42 ..................................... CAGAGTTCCTTCGCGTGTGCGAGGTCGCGCGCCGCGTAGGTG 286026 37 100.0 32 ..................................... TCGTCAGCCATGCTGCCTCTCTTCTCGCGGGC 286095 37 100.0 32 ..................................... CTCACAATCTCCGGCACGCCGCCCGGATACTG 286164 37 100.0 34 ..................................... TTGACGCGACCGCGCCGCCCAGCCGGGAGCAACC 286235 37 100.0 34 ..................................... ATTTCGTCCCTGGTGGATGCGAAGGACCCCACGC 286306 37 100.0 34 ..................................... CACGACTCGTGGAGCAGCACCGCCCGCGGGCTCG 286377 37 100.0 37 ..................................... TCGTCGAAGGCAACTTCGATTTCGCCCTGCTACGGCA 286451 37 100.0 34 ..................................... CGCCAGCCGACTTCCATCGACCAGTCGCCGCACC 286522 37 100.0 35 ..................................... TTCCGTGGGTGCTGGTCGGCGCTGCCATCGCGCTC 286594 37 100.0 34 ..................................... CAGCACGTGGCGGCCCCTCTGTATGCCGCAAGCA 286665 37 97.3 34 ....................................T CCCGCCGGGCGCCAGCGCAAGGCGGACTGGCGCG 286736 37 97.3 34 .........................A........... TGGGGCCTTATGCACGACGCCAGCGAGGCCTATA 286807 37 100.0 34 ..................................... ATGATGACCTTATCCAGGCTCCGCACGCCAGCCC 286878 37 100.0 35 ..................................... CGGTACAGGGCCAGCGCCACTTCGCCGTAGACGAG 286950 37 100.0 35 ..................................... ACGAGTTCGCGCCCGGTCTCCGGCTCGCGCTGCTC 287022 37 100.0 33 ..................................... ACGGCCGGGTCAACGCTCACCCCTTCGGTCGTC 287092 37 100.0 35 ..................................... CGGTTCGTCGTTCGAATCCGTGGAAGCGACGCGCT 287164 37 100.0 33 ..................................... TGCCCTCACCTTGCGCCAGCCGACCTCCATCGA 287234 37 100.0 34 ..................................... TCGTCATCCCCATTCGCCGGGGCGGGCGGGGATG 287305 37 100.0 35 ..................................... CCGAGACGGTGCGCCTCTTCCAAGCCGCCCGTGTA 287377 37 100.0 33 ..................................... AAGGAGCAGACGCTCACCGCGCTGAAGGTGATG 287447 37 100.0 35 ..................................... GACGCATCGTTCAACGTCGGGACGCTGGAGGCGCC 287519 37 100.0 33 ..................................... ATCCGGAGTCCCCAATGACGTGCCCCACCCACC 287589 37 100.0 34 ..................................... GGCTCGGAGATGGCGTACTACGGCCAACTCAAGT 287660 37 100.0 34 ..................................... AGCCGCTACGTCATCGCCGTGGAGCAGCCGCTGT 287731 37 100.0 33 ..................................... ACCTCGTAGCCGTGCATGCAGGTGGGCGAGATG 287801 37 100.0 32 ..................................... TCGTCGTCGAGCAGATGCAGGCGCCGGCACTC 287870 37 100.0 32 ..................................... TCGCCAACGAGGTGGTGCGCTGCCTGGGCCTG 287939 37 100.0 34 ..................................... AAGATGTTGGCCTGGTAGTCCTGCGAGGACTTGA 288010 37 100.0 35 ..................................... GTCGCGTGTATCTGGATGAGCCCCGTCAGCATCCT 288082 37 97.3 35 .....C............................... CACTCGTCACGCACGAGTTTCAGCAGCTCGCGCAC 288154 37 100.0 35 ..................................... ACCTTGTTGGCTGCCACGTCAGGCCCTCCCCTCGT 288226 37 100.0 37 ..................................... GTCTGGGCCCGGTAGGCGTCGAGGTAGTTCGTGGGTC 288300 37 97.3 33 ...................................G. GAGGGCTACATGGCCATCTGGAGTCATGGCGCG 288370 37 86.5 33 ..T............A.T.A...A............. GGCCTGATGAGCGCGTTCCTTGGCGCCCTCAAG 288440 37 81.1 0 ...................A...T.T....GC...GG | ========== ====== ====== ====== ===================================== ========================================== ================== 58 37 99.1 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGGTGCGCTGATGCGTAGGCTCACGGTGTTGGTTTGCTACGACGTGCGGGTGTCGGACCCACAGGGGGCTCGGCGCCTGCGCAAGATCGCACGGGCCTGCAAGGACCATGGCGTGCGGGTGCAATACTCCGTCTTCGAATGCGTGCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCTTGCTGTCGGCGTTCGATATGGAGTGCGACAGCCTGCGCTTCTATTTCCTGGCGGAAGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGGCCACCGCTGGACGTCGAGGGACCGCTGGTCCTGTAGCCGTCCGCGAACCGCCCCCGGTGGCTGCTCCGCCGAGGGTTCGCGCTCTTTGAAATCCCGAATAGTTTTCGAGGGTTGGCGGAGTTGGGGCGATAACCGGCGGACCCGGTGCCGGGCTCTGGAGGCAGGTTCGCGAATCGTGGCCAGATTCCGTAGGAAGAACGGTAAGTTGGCAGGGCAGG # Right flank : GCCACTGCCTTACGGCACCAAGCTCTGAGCGCCCGTCCCACGCGCGCCCCACGGCCGGAGGAACACGTCCGTCTCCTCCAGAATCCGCGGCAGGGACGCGGTGAGCTCGTGCCCGTCCTCCACCTCCACCAGCCGGACGTGGCGTTTGCCTTCCGCCCACTGGCGCGAGTTGCGGACGTCACACGTGTCATCCTGGACGCCGTGGATGATGAGCGTCGGCACGCGCACGTCCGGCCAGCCACCCGTGCGCGCGTCCACCGTCTCCGCGTCCTCGATGAAGCCCGAATGGATGCGCACCTTCTGCTTCGTCACGAAGTCGTCCGTCTCAATCCAACCGGACGTCTGCCAATGTTGCCACGCGGCCTCGCCCATCCTCCGGCGGAGCTGGGGCACCACGCGGAAGGCCGGCGCCAGGAGCACCAGCGCGCAGACGCGCGGGTCCTGCTCCGCCATCCGCGCCGCCGTGAGCCCGCCCAGGCTGGAGCCGAGGAGCACCACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //