Array 1 8349-9882 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQL01000019.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1592a x_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8349 30 100.0 36 .............................. TCCAAGCTGTAGCGTTTTTATCTTTTGCAGGTCGCA 8415 30 100.0 34 .............................. CAGAGCTAGAAAAAGAGTTAAATACCAAACTAAA 8479 30 100.0 36 .............................. AGAAAACTTGCCTGAATGGCTTGTTGAAAAAGTAGA 8545 30 100.0 35 .............................. GGTCTAGCTTGGCATTACAAAACTTATTCTAAAAA 8610 30 100.0 33 .............................. ACAATACTATGTCCGCCATCACTACTATATTCA 8673 30 100.0 36 .............................. TTTGTCAGAGGCTACAAGCTTAAGCGACGTCGCGAG 8739 30 100.0 35 .............................. CTGCCTAGCACTTTGTCGATGAGGATTAAACGGAA 8804 30 100.0 35 .............................. GTTTAGGCTTGATAGTAGAATACGTGCCTGACTGG 8869 30 100.0 36 .............................. CACTCATACTCATCATTTAAAATTTTGCAAAGAAAA 8935 30 100.0 35 .............................. AGCTATTAAGCCTTTTTACCTCTCATTTGATACGC 9000 30 100.0 37 .............................. TCCTTTTGAAAATGAGAGATTTGTTTTTTAATTCTTT 9067 30 100.0 35 .............................. AGTGTAATAGTTGAAAATATGGAAATGCTAGATAA 9132 30 100.0 37 .............................. GGTAAGGACAAGAGAGTAGCCAAAGACGTGATTACTT 9199 30 100.0 37 .............................. TTTTAAAGGCGGTATTTAAAGGGACGTTAGGCGATGA 9266 30 100.0 34 .............................. CCTATTGTAAATATCAGCGGTGGAGGATTTATTA 9330 30 100.0 34 .............................. GGTATCGAGTTTATCCGCGGTTTTGACAAAATCA 9394 30 100.0 36 .............................. GGGCTATGGATAGTAAAATGAATTCAGCTAAAAATA 9460 30 100.0 35 .............................. AAGCTACTTCAAAAAAGCGGAGCTATTAGCAATTT 9525 30 100.0 36 .............................. AAGCAAAGGGGTCATAATATAGCTTTGCTCATTTTC 9591 30 100.0 34 .............................. CAACACCTGTGATAGAATTTAGTGAATAGGATTT 9655 30 100.0 36 .............................. TCAATACTCACGCATTTACTGCTTTCATTCGATTTA 9721 30 100.0 35 .............................. TGAGATTTGGCTAAAAGACGCAATGGGTGCAAGTA 9786 30 100.0 37 .............................. ATTTACGATTTCGAAGACGCGCTAAAAATGCAAGAGA 9853 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : AGCTATTGGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGCATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAGCCAAAACCATAATAATAAAACTAAACATTTATAAGCCTTTTTTAAAAATAATATCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATTAACAAAACAGCAACCACCCTAAGCGATGCCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAATGCAAATCACAAAAA # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTGAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACGCTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //