Array 1 3401976-3400808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134201.1 Cedecea lapagei strain NCTC11466 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3401975 28 100.0 32 ............................ TGGGAGGTCTGGACGAACCTGATGCGCTTTGA 3401915 28 100.0 32 ............................ TCCTGCTGCCGGGTGCTCCGGTGCGCTGTCTT 3401855 28 100.0 32 ............................ TGACAAACAACCCGATATCTGGGCTCAACTAT 3401795 28 100.0 32 ............................ GTTCTTTGTACGCGACGCCCGACGCCGCAAGA 3401735 28 100.0 32 ............................ GTTACTCGTCGCGGATATTGAATCAGCTGAGG 3401675 28 100.0 32 ............................ AAAAACACTTAGCGCTATCTGCGCATTCACTT 3401615 28 100.0 32 ............................ GCCGTGCTTAAACGGCATCACGGATGGTCAAT 3401555 28 100.0 32 ............................ AGCGTGACGACACCGGCGAAACGGTGCCTGTC 3401495 28 100.0 32 ............................ TGGAAAGCAATCTGGGCGCAGGCCGTGCAGCA 3401435 28 100.0 32 ............................ GCATCATTTACGCGCTGAAACGCCAGCGTCAG 3401375 28 100.0 32 ............................ TCATGGACGCCCTGGCTCAGTACGACATATTC 3401315 28 100.0 32 ............................ TATCGAAAAGCGCGACCGCCATTTGTTCGGTC 3401255 28 100.0 32 ............................ AGTACGGTGACTGACCCTGCGATTAACTCTGT 3401195 28 100.0 32 ............................ TTATGATGCAGGGCTCTTCCAATGCTAACTCC 3401135 28 100.0 32 ............................ AGTTAAAAAGAAACCCGCCGAAGCGGGCAAAC 3401075 28 100.0 32 ............................ CGGAGCTGCACACTCGCGGGCGTCACTTCTTC 3401015 28 96.4 33 ......................A..... CAGTCGGTGCGGGCGAGCTGGACAACCTCATTT 3400954 28 100.0 33 ............................ AGACACCGACATAACATGACCGCACGTATGACC 3400893 28 100.0 32 ............................ AACTTACGAAGAGTTAGAGGCGCAGGTGGCGA 3400833 26 89.3 0 ....................-..-...G | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATAAGGGGAGAATTTAGCCGCTACGGGTTAAGCACTGAGGCGAGTATTCCTTGGTTTTAACCAGCAAGCAGGGCGGGAAACCGCCCTTTTTTCTTCAGAGCGTTCATAGTTAAAGCAATTTTGACATGAATGAGATTCTCTTCATTTTATTCACCGCTGTGCAGGTCGAGTTGAAATAGTCGTCATGGTATCGATTGGAAAGCTCACTACTACACAAGTCTCTTTCAGCCATAAAGCCAGCGATATTTCTGTTCGATTTTTTTCCAGTCCTGGCGTCGTTATTCCTGCCGGTTCGTCATCTAAAGAACGGACTTAAAACATGGATTGTTGCTGAAAAACCATTGATGCTAAAACCTGAACGTCCGTAGACCCTTTTTTTATCCTAATTCGTAACTTATTGATTTATCGCTTCTGTGCTGTTGTGGCTAAAAAAAAGGTGTGGAGTCAAAAAGAGGCGTCTTAGTTTATTGCAACAAAGGGTTAGCTGTGAAAAGCTTTA # Right flank : CCGGCAGGAGCGGCACGGTGAGAGTGATTGCCGTGCCGCTCCAGTGGTCCCTCACGCCAGCCTCAGCACGCTATCCAGCGACCAACGGCCTGCGCCGCGGGAGACAACCAGCAGTAACAGCCCGCCCCAGATAAGGTGTGTCGGCCAGGCGTCCGGGTAGACAAAAATCTCAATCACCAGCGTCATAAACAGCAAGCCTGCGGCGGCGAAGCGTGAAAACAGGCCCAGCACCAGCAGAACAGGGAAGGTGTGTTCGGCAAACGTGGCGAGGTGGGCGGCGATGTCATAGGGGATGAGCGGCAGCGCGTATTCGGTGCGGAACAGCTCGTAGGTGGACGGTTTGAGCGTCATAAATCCCGTCACTTTGGTGCGGCCCGAAAGGAAAAACACGGCGGCAATGCCCACGCGGGCGACGAGTAACAGCAGGTTATCGCTGACACCTGCCTGAATCCGTTCCCAGATTTTGTTCCACAGCGAGCGAACGCCCTGTTCCGTTATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3411142-3410994 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134201.1 Cedecea lapagei strain NCTC11466 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3411141 28 100.0 32 ............................ ATCAGTTACAGCTTCATCCAGCGACGACCGCA 3411081 28 100.0 32 ............................ CTGGACAGGCGACACGGGTTGTGTTTTCTTCA 3411021 28 82.1 0 ....................A.C.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TTAGATTGGTAGGACCAATTTTGCTTTGTAGAGCAAATGATGGCTAATGGTTAATCTTGTGTTAACTATTGGCAACGGTCTGGATGGCCTTTATCGGTAATTTGTAGAAAAGGGCACGTTTTTAGCGAAATTGGTAGGACCGAATAGCCTCTCCTCCGGGCGGAAGAGAGGGCGATAAGTTAACGTTGTTGGCTCACCTGATTATTTTGAAAATATGACTAACCGGCCACGCCGCAATACGTCCGGCGGCAAGCAAGCACACGACAGATTTCCCTCTGTTAGTCGATGCAATGCGGTATTCGGGTTAGTCATCAGCCCATTAACGGATTTTCCTATGGTTTCAGCGATGCCAAAGCCGGATCGTTCGCGAACCCTTTTTTAAACTCAGCTTGTAACTTATTGATTTAATGGAGTTGTACAGGAGTGTATAAAAAAGGGTATGAAGAGAAAAAGAGACTCTTTTATTCATTGCAACAGAGAGTTAGATGTGAAAATCTCTT # Right flank : ATTAAACGCCCATTTATGCATTAAATGAAATTTATTCACTATGTTGTCAGAACTACTGGTATCATTTATTTTGAGTAAATCATCAGTTTTTAAGTAAAAAAACGCTATGATGCTTCCCTTGGGAGCATTGTATTCAATTGCATGGATGTAATAGCTATGTTGATGCCTTCTGACTTAAAAACCATTCTTCATTCTAAACGAGCAAATATTTATTATCTTCAATATTGCCGGGTGTTAGTAAACGGTGGACGAGTGGAATATGTTACCGATGAAGGTAAATCCTCTCTTTACTGGAATATCCCCATAGCTAATACCACGGTTGTGATGCTGGGAACCGGCACATCTGTCACGCAGGCCGCCATGCGAGAGTTTGCAAGGGCTGGTGTGCTGGTCGGTTTTTGTGGGAGCGATGGAACGCCCCTCTACTCAGGTAATGAAGTCGATATCGATGTTTCATGGGTTACACCACAAAGTGAATATCGTCCAACAGAATATCTGCA # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGTTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //