Array 1 397131-398405 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799706.1 Neisseria sp. HMSC058F07 Scaffold516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================== ================== 397131 33 84.8 32 NNNNN............................ GACACCGCCATCAACGCCGTCGCCTACGTCAA 397196 33 93.9 33 CG............................... TACACCAATGCTGACAGCGTATACGGCGGCAAA 397262 33 93.9 33 GG............................... TTTTTACCAATAACGGGAGTAAAGCATGTCTTG 397328 33 100.0 32 ................................. TAGGCGAAATTCGGGGAGATGAAGCCTTTATG 397393 33 97.0 34 .T............................... ATAGGTAGAGCAGATGTGATATTTACAGGAAAAC 397460 33 97.0 32 .A............................... TATCGAAAGGAAATCACAATGAAAAAGTTATC 397525 33 97.0 32 .T............................... CATGTTGTATGCGCGTTGGCAATCATGGCATC 397590 33 93.9 32 GG............................... ATTGCCGTCTGCTTTGCTTTGCACTGTCGTGA 397655 33 100.0 32 ................................. ATCGCCGAATACCAAACGCCTGCCGAGCGTGA 397720 33 93.9 37 AT............................... GCAGTGTTTTGACCGTGTCAGCAATCACTATCGCGGC 397790 33 100.0 33 ................................. GCCGTTGATGATGTCAAATAACGCCTGGATATA 397856 33 97.0 34 A................................ CCGTTTATCGGTATCGCGCGCCTGATTGTTAATA 397923 33 78.8 88 A..........................NNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 398044 33 81.8 34 NNNNNN........................... TGATTGAGCTGAGCGGTAAGGGTTGCAATGTTGC 398111 33 93.9 32 AA............................... TCAGGCCATTTTAGCCAAACATTCATGTCTTG 398176 33 93.9 33 AA............................... TCGCAAATAGTCGACTTCATCTTCTGACAAATC 398242 33 93.9 32 CG............................... AGGTAGGCAGAAGCCGATAGCAAGACATCGAA 398307 33 93.9 33 AG............................... GAAGTACCTGAGGGTCATGTAATGATGGTTTAC 398373 33 93.9 0 AG............................... | ========== ====== ====== ====== ================================= ======================================================================================== ================== 19 33 93.6 36 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTCGGTGTTCGAATGCGACATCGCGCCCGATCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCATGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGGCTCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTGAAAGAGTTGCAGGCATTCACTGGATCAGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //