Array 1 38393-39406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLW010000013.1 Clostridium perfringens strain CP-43 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 38393 30 100.0 35 .............................. CTTTGAAGTGTTTTAAATTCTTTAATTTCCTGTTT 38458 30 100.0 35 .............................. CCCTGTTCTGCATTTGTTATTGAAATGTCTGAAGA 38523 30 100.0 36 .............................. ATTTAAAGCATATTTTTTTACTATGTATATTTCAAA 38589 30 100.0 36 .............................. CCTTTTATTGTTGCTGCATAACTTCCCATAATATCT 38655 30 100.0 34 .............................. TTAATATTGGTCTTGTTATCTTTAAGATTCATGG 38719 30 100.0 35 .............................. TAGTTTTGGAGATCCAGTCTATACTATTAGTAAAA 38784 30 100.0 34 .............................. ACATCTGTAAATGTTTGATATGGTGCTCCCTTAC 38848 30 100.0 36 .............................. AGCTTTAAGACCGTGTATATTTAATAGTGTATATAT 38914 30 100.0 36 .............................. GAGGTGACTAGAGATATCCATAGCAGACATCCTGAT 38980 30 100.0 36 .............................. AAGATGCTATACTAGTATCGTGGAATAAGAATGAAG 39046 30 100.0 36 .............................. TGTTTTATCCATTCATTTTTAGCAATAAATCCATCA 39112 30 96.7 36 .......T...................... ATGATGGCTTTTTAGTCCTTGTACTAGATATTAACT 39178 30 93.3 35 .......T........G............. AATTCCTCTTGAGCTGCTTTTATCTTTGATTCTTT 39243 30 93.3 36 .......T........G............. TAAATTCCATATTAATCATCTCCTTTGATTATATAT 39309 30 93.3 36 .......T........G............. CTACTTATAACTACAAGAACTTTCTAAGGTTATCTA 39375 30 100.0 0 .............................. | TT [39397] ========== ====== ====== ====== ============================== ==================================== ================== 16 30 98.5 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAATAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAGCTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTAAATCTTAGTATTTAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATCACCTTTCAGACCTTGCAATAACTAAATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGACACTGAAATAACTAGCTTAAAGATAAATATAAAAACAAAGAAATGGCTATTTTACAAGC # Right flank : TAAGAACTTTAAATATTAAATTGTTGAAATAGGTATATTGCTATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAATATTTTATTAAACAATTAATGTTACAAAAATATATAAATTTATAAAATAATTATTTATTTTACAAAATTTGTTAGGTGGAAATTAAAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAGAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTAGAGTATTTAAAGAATGTCTTTAATGAATAAAATATTTTAACTATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 49730-51070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALLW010000013.1 Clostridium perfringens strain CP-43 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 49730 30 100.0 35 .............................. TTAAAGTTTGCATACTTTAAATCTTCGCTTCTTAG 49795 30 100.0 34 .............................. CTTGTTACTAAAGCTGAGTAAGTATTAGTTATGA 49859 30 100.0 36 .............................. TACAATAATAACAAGGTGGATTAATTTCCACCAACC 49925 30 100.0 36 .............................. AATGCTCCTATATGGTCAGTATGCGCATGAGTAGCT 49991 30 100.0 36 .............................. CCTTTTATTGTTGCTGCATAACTTCCCATAATATCT 50057 30 100.0 36 .............................. TTAATTCTTTTTTCTAATTGATTAGCATCTGCACCG 50123 30 100.0 36 .............................. TAGAATTTATAAATAGCTTCTATATCTTTTTCAAAA 50189 30 100.0 36 .............................. AAACGTTATTGTAGAGCTTGAAGAATTTATTTTAGA 50255 30 100.0 35 .............................. AAAGAATCCTTTGATTTCTATTCAAATTCAATATG 50320 30 100.0 36 .............................. ATATATAAGTAATGGAGATATATTCCAACTATTTGA 50386 30 100.0 37 .............................. ATAATCCGTTTTTGTCCATGATTAAGTCTTTTTCTTC 50453 30 100.0 36 .............................. ACTGACTGTCCTGGTAACTTAGATTTAGACAAGTTA 50519 30 100.0 36 .............................. TTCCCAAGTTATTAAAGCTTAGCCAAACATATTTAT 50585 30 100.0 36 .............................. GAAAATAAAAAAGAAATACATATAATAAGCTATGAA 50651 30 100.0 35 .............................. GCCGAATTAAAAGTAGTAGGCGAAAATATAATTAC 50716 30 100.0 35 .............................. TAAACCTCTCTAGCTGTAATAACAGCTACTTCTCA 50781 30 100.0 36 .............................. AAGCAAAACTTTTAATTATATCTTTCTTATATACTT 50847 30 100.0 34 .............................. AATGTTTTGATTAAAAGAACATTAAAAGATTCTA 50911 30 100.0 34 .............................. AATGTTTTGATTAAAAGAACATTAAAAGATTCTA 50975 30 100.0 36 .............................. TTCTACACATTACCAAAAGAAGAAAGATTAAAGGAT 51041 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTCAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAATTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGCTTATGAATCTTGGAATGGCTTTATTTTTAAGTTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGCTTCATGTCTTTTTGGCCAGTTTCATATTTACTTGATGAAAAGGACAAGGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTGCTCTATTATTGTATTAATTATTTATATATTAAAGAATTATGATAGAGTTAAAAGCTAGTAATATAATCAAAAGCAATATAATTTAAAAAATATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //