Array 1 3-916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFJH01000153.1 Mycobacterium tuberculosis strain Bir 158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 97.2 35 ...............................G.... ACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 74 36 97.2 37 ...............................G.... CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 147 36 97.2 41 ...............................G.... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 224 36 100.0 36 .................................... TAGCGAAATACAGGCTCCACGACACGACCACAACGC 296 36 100.0 39 .................................... AACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 371 35 97.2 38 ...........................-........ TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 444 36 100.0 37 .................................... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 517 36 100.0 37 .................................... TGTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 590 35 97.2 35 ...........................-........ ACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 660 36 100.0 37 .................................... TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 733 36 100.0 40 .................................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 809 36 97.2 36 ...............................G.... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 881 36 97.2 0 ...............................G.... | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 98.5 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGCAAAC # Left flank : AGG # Right flank : | # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGCAAAC # Alternate repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 2-774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFJH01000018.1 Mycobacterium tuberculosis strain Bir 158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2 36 97.2 40 ...............................G.... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 78 36 100.0 37 .................................... TGTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 151 35 97.2 38 ...........................-........ TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 224 36 100.0 34 .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 294 36 100.0 38 .................................... TTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 368 36 100.0 38 .................................... TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 442 36 100.0 35 .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 513 36 100.0 40 .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 589 36 94.4 40 ...C...........................G.... ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 665 36 94.4 38 ..................A............G.... TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 739 36 97.2 0 ...............................G.... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 98.2 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGCAAAC # Left flank : TG # Right flank : CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGCAAAC # Alternate repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //