Array 1 59145-57261 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCG01000012.1 Neisseria meningitidis strain M38636 M38636_CHA4355A2_cleaned_ctg_8516, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59144 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 59078 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 59012 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 58946 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 58880 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 58814 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 58748 36 100.0 30 .................................... GCCCACACGCCGCCTAGCACGCCGCCGAGA 58682 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 58616 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 58550 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 58484 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 58418 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 58352 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 58286 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 58220 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 58154 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 58088 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 58022 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 57956 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 57890 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 57824 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 57758 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 57692 36 97.2 30 .......................T............ ACTTAATTTATTCAGTTCTTCTTTATGCCA 57626 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 57560 36 100.0 30 .................................... ATCGTTTCAGATTTCGGCCTTTGATTGCTG 57494 36 100.0 30 .................................... CGACATCGGCATCACCGCGTGGTTTCCGTC 57428 36 100.0 30 .................................... GCCGGTTTCGTACAGGATTTCAAAAAAGCT 57362 36 100.0 30 .................................... GTCTGAAAAATATTCTTTCAGACGGCCTTG 57296 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //