Array 1 284309-284938 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJK01000001.1 Moraxella catarrhalis strain 78/205/2 NODE_1_length_284976_cov_21.447542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284309 28 100.0 32 ............................ TTGGCATAAAAATCTAGCCCTTGCGATACAAA 284369 28 100.0 33 ............................ AATTACACTTGTAATCGTCGAAATGCTTCTTGT 284430 28 100.0 32 ............................ ATCCGACATCTCATTGCCTACCGCACCACCTG 284490 28 100.0 32 ............................ AAGAAGCCCACCAAGTACAGACAAACTCTTAT 284550 28 100.0 32 ............................ AAATATTTGATTTTTATTTTCTCACAAACGCA 284610 28 100.0 32 ............................ TTTTTAAGATTTGATAGCTTATTAGCGTTGAG 284670 28 100.0 32 ............................ TTTTTTTTGAAAAATGGTTATTGCTATGGTTG 284730 28 100.0 32 ............................ ACTGATCCTCCCAGCGAAACTCAAAGCGAGCC 284790 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 284850 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 284911 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ACCACAAAAGTAAGGTGGGGATTTACTGCGATCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40-968 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJK01000026.1 Moraxella catarrhalis strain 78/205/2 NODE_26_length_16171_cov_22.332024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 100 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 160 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 220 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 280 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 340 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 400 28 100.0 32 ............................ CGAGTTAAATCAAAGCATTGCTGATGCTCAAA 460 28 100.0 32 ............................ ATATCAATCCCATAGTGCCTGTGGGTTGACAA 520 28 100.0 32 ............................ AGTAATGGTGCGGTTGCTTTAATTTTACCTAC 580 28 100.0 32 ............................ ATTTCAAACAAAATAGCACGCAAACGGTTAAT 640 28 100.0 32 ............................ GGGTGGAGAATCTGAGAATTTTTGTATAGCGA 700 28 100.0 32 ............................ AAACCAACAACAGCAGTAGAATTTACTACTTT 760 28 100.0 33 ............................ TTATTGATTATTACATTTCAGCGTTGAGATTGC 821 28 100.0 32 ............................ CTGAGCTGACTGCCCATTTGGTTTTTAGCACA 881 28 100.0 32 ............................ TAAACCTTATTGGTGCGTCTGCTGTCAATTTT 941 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTGTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACTGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //