Array 1 181436-180618 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANNJ01000003.1 Campylobacter concisus UNSW2 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 181435 30 100.0 37 .............................. GTAAGAGATATTAGGTCAATAGTGCCATTTAACTTTC 181368 30 100.0 38 .............................. TCGCAAACAGTGGCGAGCTTTACAACTTGAAACAAAAA 181300 30 100.0 35 .............................. GTAGTGATGTCTCCGCCTTTTAGCACACCAACTGC 181235 30 100.0 38 .............................. GATACTCTTGTGATGGCTAGGCTAGCCCTAGCAGACAT 181167 30 100.0 36 .............................. GTCTTGCAGTTGGTGGCTTTTTTGCGTGGAGAGGCA 181101 30 100.0 34 .............................. AAATTCTCGCCAGCATTGCAAGTAGTAAATTTAG 181037 30 96.7 34 ...............A.............. AAGGTAAGAGTTTTTTATTAATTTGACAAGAACG 180973 30 96.7 35 ...........................G.. ACTGCTGTTTCGACTGCTGAGATCAAGTATATTTA 180908 30 96.7 36 .........................A.... CCCAGCAAAAACGCTCTAAGCCTTTTTAATAGCGCC 180842 30 96.7 35 .........................A.... TACATTAATGAGTCTAGAGTTCAATAGCCCTAAAA 180777 30 100.0 34 .............................. TCGTGGCGATCGTAAAATCACCCAAAAAAGCGCC 180713 30 100.0 36 .............................. TCTTCATATCAACGGCTATTCTGTTAGGGGTGGCGA 180647 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : ACTCCGTTGGAGTTTGAAACTTTCAATCAACAAATTTACTACTACCACGTGATAG # Right flank : AACACATAAGCGACGATTTAATTTTCATAGAAGAGATTTAAATAATAGATCAAATAAACAACAATTGCTATCTTGCAAAGATGTATCAAACAAACGATAATATTGTTTTATGCAGATACTTCGAAAGACCAAAACCCCAGCCAATACAGCAAAAAAAGAAACTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATACCTTTTAACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 315-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANNJ01000076.1 Campylobacter concisus UNSW2 Contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 314 30 100.0 36 .............................. TTTGTATATAAATCTTCAAACGGAAAATCTAAGTAT 248 30 100.0 35 .............................. AACTCCCCTACAACACAGCCAAGAGCTGCCAAAGC 183 30 100.0 35 .............................. TGTATGCCAACGATGATGCGATAGCCCAAGCTAGA 118 30 100.0 38 .............................. CCTTTTAGGCTTTTGCGACGAAGTTCGTCCAATTTCTC 50 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : ACTCCGTTGGAGTTTGAAACTTTCAATCAACAAATTTACTACTACCACGTGATAG # Right flank : CTTTCAATCAACAAATTTACT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 446-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANNJ01000048.1 Campylobacter concisus UNSW2 Contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 445 30 100.0 36 .............................. ACAATAATTTTGTCGGACATTTTCGGCGTTAAAGCC 379 30 100.0 36 .............................. TCTGTTAAATCTTTATCAACATCATCAATAGACGCA 313 30 100.0 35 .............................. CTTCAAAAGCTTAACACTCAACTTAAAAATTTTAA 248 30 100.0 36 .............................. AAGAAAAGTCATAGTTGATAGTTTCAGTTGATTTGA 182 30 100.0 34 .............................. CCGAAACAAATTTAAAAGATATAAAAGATTTAGG 118 30 100.0 38 .............................. CATTTTAGGCTTTTGCGACGAAGTTCGTCCAATTTCTC 50 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGTTTTTTGCATGAGCCAAACTACCGCGCGCTAAGCCTTCACCTCGACCTTGCGGAGATTTTTAAGCCGATTTTGGGCGACACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGTAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCAGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCTTTTTTTAAGATTTTAGAATACTTGAAATTTAGGGCTTGGCGTATTTATGTGTGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCG # Right flank : CTTTCAATCAACAAATTTACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //