Array 1 24099-24330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIP010000035.1 Thermoactinomyces daqus strain s-11 Scaffolds_35_28272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 24099 30 100.0 37 .............................. ATTGCTCCAGGCGACGGAAAATTTCCTCAGTAAAATC 24166 30 100.0 36 .............................. TAAACTCCAACTTGAAGGTAATCATCAACAGCAAGA 24232 30 100.0 38 .............................. GGATGGAGCCGATCTCATGAAATCCCTTTTCCGTGTAT 24300 30 80.0 0 ...................CC.GG...T.T | A [24316] ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.0 37 GTTTAGTTGTATCCATATTGGAATTGAAAC # Left flank : CCGTGGCTACATTGATGACCTCAAGAAGACCGAGAACAATCCGACATCGAATATGGGGATTTAGGGTCACTTCATGATCCGATTTGATCACCAGTTGTGTACCATCCCATCCGGAGACCAATCAAAATCATAAACGCTCCGATATGGGATGTTCTTCACATGATCGATCACATTATGAATCATATGAAATATGATTTGATCGATGATATCAAGGATGAAAGTTAAATCTCTGATTTTCTTTGTCTCGTCTGTGTTGCTACCATTTCTGACAAATCCAAAGTGACTCGCATTTTCAAACCTTCCATCATGATTGGTACGGCTGTCCTGCCAAAATCAAGCGACAGGTTTTAATAGAGAAGTGATTGGGGAACATCAATAAAAATCCGAGCACATCCAAGAGTCTGTGAACCTCCCGGGGATTTTGCAGGATTGGAGGTTTACAGACTGATTTTGTTTTTTATAAACTGAAAATAATTGATATTATCGATATTCACACACGG # Right flank : TGTGGTGATTTAGTGCGGAGAAAAACGATTGAGCGAGTTTTTGCCGATATGAAAGAGATGCATGGAATGCGTTGGACGACGCTTCGTAGGAAGCGTCGTATTCAGATGTACAGTCTGACTCCTACCAGTAATATACAATGGTAGGAGTCATCAGCTCCTAACAATATTTATTCTGCTCGGCAAACAATTTTCCAAGCTCTCTTAATAACGCTGGTGAATCGAGTCGTCCCATATGAACTTCGATAAACACCAGTTTATTTGCTTTTTCAGCTTTAGAGAGCACTTCTTCCAGTTCTTCTTCAGTTTTAATTTGAAAGCTGATGCTATTCCCATTTAGATCCAGCACATCCGGTATGCGTCTATAATTCCACCTGTTTATATCGTTATACCTCTGCTCGGCACCATGAATCATTCGTTCAACGGTGTAACCGTCATTATTGATCAAGAAAATAATCGGTTTCAGGTCATGAAGAAGGATCGTAGACAATTCTTGAGCAGTA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTATCCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 52655-52837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIP010000013.1 Thermoactinomyces daqus strain s-11 Scaffolds_13_88940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 52655 37 100.0 36 ..................................... AACTTTTTGCCGCTGGAGGCTTTATCCCAAAGCTCG 52728 37 100.0 36 ..................................... GCTGTTGATTGGCAAAAACCGGTAGAATGAGAGCGG 52801 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Left flank : GCCGTAAAAAACGCCCACCCGCAGGCGCAAAACCAGGCGCGGCTGATCCTCCCTTCCAATAACGACAGCGCGGTGGCGCATTTGATTCAAAATCATTTATTGCCAACACTTTCCCAAACATCAAACTGAATGGAAAAGGAGACCTGTTGCCGGGTCTCCTTTAGACTTGTATCCGGATTGTTCTCACCTGGATCAAGCGGAACCGGTTATCTCAAAATAAAAAGTGAAAAATTCTGCCCTTTTCTGTTTTTTTGTTTTCTCATTTGCTATATTAGCAGTAAGGTGCTGCAAGAAGATCCCTGCCATCATTTGCGAACACCGGAAGCTTCGAAACAGATCCAAGGGATGTTCGGAAACGCCAAAGGTCGCAAAAACAAAGGGGAATCAGACTTTTTGAATGGAGAAGATCCTGTCAAAACGGTTCGAAACCCGGATGAATCGGAAAGGTGTTCGGAAAATCACGTACAAACTCAATAATCAGAAAGGATCTCATGAACGCC # Right flank : CATCTTGCGGAAACGGCCGTGATCGGGGCTCGTTGAATCAATTTACGTATGAGCAAACAATCCATATGCTCTGTCGATTTATTTTCACACCCCGGATGAAAACGAATTTAAGATGATCACAACTTTATGATCAGACTTCAAGGGGGGGGATTTACCAGCCACGGCATTGGATGAATGGTTTATCAACAAGAATGAATTTTCTATAATTTTCATCAATATTCCGTACACGTCACTACTGGTCTGCAAGAGGGGAATATTTCCGCCTGGTCGATCGGGCGAATTTCCCGGCGGAAAATTTAAGCGATCCTCTTTGGATTCCCATTCACAATTAAATTTTAAACACAAGCAAACTCGTATCAAAAATCGCTTCCATCTCATAAATTTCATATTGGCTTAATTGCAGCAATGAACACGGTTTCAGCCTGAACCGCTGATTATATACACTAAACATGATCTCCCCGCGAATCAAAAAAATAATTGCATCAGAGTTTAAATAATGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 7190-7010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIP010000055.1 Thermoactinomyces daqus strain s-11 Scaffolds_55_7666, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7189 37 100.0 35 ..................................... CTTTCCATTCTCCATTTTCCTTTACTAGCTTTATT 7117 37 100.0 34 ..................................... ACTACCCTTCCATCCTTCTCCTTCAAATCTCCCC 7046 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Left flank : GCTATTTAAGGGTCCCATCTGAGACACCTCGTATGTTAGCAGGAGGTACTTTTCCTTTTCAAACAGTCCCCTTCTCCATTACAGGAATGCTCCTTTAGTATAGACAGTGTGAATCTCTTGTATTTCTTCTAATACAGGTGCCGGTTGTCCTGCTGCTGTCATATATATCAATCCTGGAGTATACATGGGCGGTTCGTCTCACTAACTAGTTACCAGGCTGTATTGCAAACAACAAAATGGATTACTTATAATTGAAGATAAAATATGAAAAATTTTCGCCGGCATTTGCGAACACCGGAAGCTTCGAAAAAGACCCAGGGGGTGTTCGGAAACGCCAAAGCCCGCATAAGATAAGAGGGAACACTACTTTTTGGATGGAGGTTATCCAATCAATAAAGCCCGAAACTTGTCCAAATCGGGGAGATGTTCGGAAAATCGCATATAAACTCAATAAAATCAAAGGGTACAGTGAACGC # Right flank : GTGTCGAGAATCGGCTGACGTTGCTTCTGGTAACACCGAATCAATAAATAAACTTCAGGAGACCATCGTACTGCGTTAGTCACTAAAACAAAAAAGTCTGTCAACTTCTAGCACCGTAAAAACCCGGGGGTTGACAGACTTTTGTTCAGTTTGTTTCCGATACGAAGGGAAAATGGCTCCATATTTGAGAATTGTTGCCTGCCTTTGCCAAAAAAAGAGGCGTCCATCGCTTCTCTAACCTAGGGCATATAAGTCGAAAAATCCAAAAACATTTCTGTTTATTGGAAAGAACCGAGTCGCCGGATGCTGGCTCTGCCTCTGTTGATTTAAGCATTAAATTCCTTCCACAATCCGTTTTGCCCGTTGATGCGCCTCGTACAACAGTCTCTCTTCGTCAATCGTCAACAGTTCTCTGTTTTTCATCAGGATCTTTCCATTCACAATCGTTGTCACCACATCTTGACCGAAAGCGGAATATACCAGCAGCGAGACCAAATCAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //