Array 1 196309-194202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTK01000025.1 Salmonella enterica strain CVM 43845 43845_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196308 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 196247 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 196186 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 196125 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 196063 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 196002 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 195941 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 195880 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 195819 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 195758 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 195697 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 195636 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 195575 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 195514 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 195453 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 195392 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 195330 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 195269 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 195207 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 195146 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 195085 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 195024 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 194963 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 194902 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 194841 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 194780 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 194719 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 194658 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 194597 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 194536 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 194475 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 194414 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 194353 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 194292 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 194231 29 89.7 0 A...........TC............... | A [194204] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 213693-212567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTK01000025.1 Salmonella enterica strain CVM 43845 43845_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213692 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 213631 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 213570 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 213509 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 213448 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 213387 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 213326 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 213265 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 213204 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 213143 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 213082 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 213021 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 212960 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 212899 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 212838 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 212777 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 212716 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 212655 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 212594 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //