Array 1 62000-60352 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLW01000012.1 Photobacterium iliopiscarium strain NCIMB 13481 CFSAN065520_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61999 28 100.0 32 ............................ TACGTTTTGAAGCATAGCGATATTCATGAAGG 61939 28 100.0 32 ............................ TTTAGTAATTGACCGCCAGTTGCCGATTCCGC 61879 28 100.0 32 ............................ TCCCCAACAAAGTCACCAACATCTGATGTACC 61819 28 100.0 32 ............................ AGCAACACCAGATTATATTTTTTCAATTGATG 61759 28 100.0 32 ............................ ATCTAGTTTATCAACCTCTACTAAGCTAGACT 61699 28 100.0 32 ............................ CTAGTAGAGCATAGCGGCTTAGCTGATCATGT 61639 28 100.0 32 ............................ AACGGGCAGATGGCAGCCATATTATGCACTGA 61579 28 100.0 32 ............................ ACTGATTTAACGCCACTTGGCATTTCATAGAC 61519 28 100.0 32 ............................ GCGCACCATGACAGCCACGGCACATCATTTTC 61459 28 100.0 32 ............................ GTTAGGTAAATTAAGCGCATTACAATATCTTG 61399 28 100.0 32 ............................ TGAACAACAGACACAAAACCAGTGGAACAACT 61339 28 100.0 32 ............................ GACTTTTTGCGGCACAGATTTACATTTTTTAG 61279 28 100.0 32 ............................ GTCGGAAGAATATCACAATCTTCCGAACAAGT 61219 28 100.0 32 ............................ ACGCTCACATGAAAGATAATTACTGTCGTGTA 61159 28 100.0 32 ............................ AGACAGCTCCATCATGATGTCCTGACGCACCC 61099 28 100.0 32 ............................ AGAAAGGGGGCTTAACGGCTCCTTTTTCATAT 61039 28 100.0 32 ............................ GTTAAAGATACCTACATCAAAGACGTTAATGG 60979 28 100.0 33 ............................ ACAACAGATGGTTGGTGGATTTTCAAGGACCTT 60918 28 100.0 33 ............................ ACAACAGATGGTTGGTGGATTTTCAAGGACCTT 60857 28 100.0 32 ............................ AAAGGCTCAATTTTCAGGTGAAGGCGTTAAGA 60797 28 100.0 32 ............................ TCTTTAAAATCCGCATCAAGCAACCAAGCAAG 60737 28 100.0 32 ............................ GTAAGTAAAGTGTAGACATAAATATGTAAGTT 60677 28 100.0 32 ............................ AACATAGCAATAGCAATAATCCACTCAGGATC 60617 28 100.0 30 ............................ CGTCTAATGACTACTACTGTCTGTCCGAAA 60559 28 96.4 32 T........................... TTTGATACGCCAGCCATGGCGCTCTCAAATTC 60499 28 100.0 32 ............................ ACTCAAATAGAGTTTCATTTTGAGTTTATATT 60439 28 100.0 32 ............................ TCTGCAAGCGTTTCTTCTGAGCAAAAAGGATT 60379 28 82.1 0 .................T.A....ATT. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTACCTCATTGGCTGAAAATAAGGGCGTTCCGCCACCACCACAAAAACCCACCAGCACCCCTGCTTTAGCTAATTCACGCATTGCGGCCTGAGTAATGGACGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAATACGCGGCAATGCTGTAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTGACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTAGCGAGGATTTGTGGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : CTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCCATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGGTTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATCTTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAATGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70554-72144 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLW01000012.1 Photobacterium iliopiscarium strain NCIMB 13481 CFSAN065520_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70554 28 100.0 32 ............................ CATGACATTAATAACTAGCTCCCCAATTTCAG 70614 28 100.0 32 ............................ CAATCGCACACTAGCGGCTGTTCTAGACCTAT 70674 28 100.0 32 ............................ ATGCGCCCATAGCGTTACGCCCGTTTCGACAG 70734 28 100.0 32 ............................ GCGTGGAATCATTAAACACGTTACCAGCGCAG 70794 28 100.0 32 ............................ AATCGATGGGGCATTGCATGAACCGCGTGGAA 70854 28 100.0 33 ............................ GCGACGGTATCTTTTATGCGATCACCGTTTAAT 70915 28 100.0 32 ............................ AATATCACTAAACTCATAATTAAAACGATTAA 70975 28 100.0 32 ............................ GCTATTGCATCATTAAAGATTGATGCCGTGGT 71035 28 100.0 32 ............................ AGCACATAAACTACGCTTCTATAGTCGTCAAG 71095 28 100.0 32 ............................ TTATTGATCCTTGGTGGTGGCCCTATTGGTTG 71155 28 100.0 32 ............................ TAAATTGGCTCGAACTAGACAGTCTTTAGCTT 71215 28 100.0 32 ............................ ACATTCGGGACACTGAAGACGACCATTATCCT 71275 28 100.0 32 ............................ AGTTTTACAAGATTAACTCTTTGTCTTGCTTG 71335 28 100.0 32 ............................ CTCTATAGGATAATTCAAATGGCTAATCACAA 71395 28 100.0 32 ............................ AATGCGATACCTAAGTAATCATTATCATGACG 71455 28 100.0 32 ............................ TCCTTGAGTGCAGCGAGTACGGGTCTCGTTTG 71515 28 100.0 32 ............................ TGTATTATCTTGAACGTTAAGGCCTCGAGCTT 71575 28 100.0 32 ............................ TGTGTTCGCATCAGAATTTGGCTCCCCACATC 71635 28 100.0 32 ............................ ATGAACACGTAACTTATTAATGCGTGGGATAC 71695 28 100.0 32 ............................ ATTAGTTCAACGGCGAGCACAAAAGCAACATA 71755 28 100.0 33 ............................ TTATTGTGTGACTCAACTATTGAGCCACTTCAT 71816 28 100.0 32 ............................ TAAGCAATGGGGTTTTAGGGTTGCGGTTCCTG 71876 28 100.0 32 ............................ ATTATTCGGATTATGCGATTCTGGATTAAAAC 71936 28 100.0 32 ............................ TGAAGATGGGAATGTGTTTAAAAACCTATACA 71996 28 100.0 32 ............................ ATCACATTGTGACACTGTGCTGATAGGTCATT 72056 28 96.4 32 .........................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 72116 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [72140] ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCATGTAACGACTATTACAGAAATTCCGAGTGACATCAAAGGTTATCAAACCGTTAAGCGTGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCTATTCCTGATACAGCAGAGCGTAAGTTAACTTTGCCTTATGTTCAAATACAAAGCTTATCTAATCAGAATGTGATGCGGGTGTTTATTGAGCATAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATCAGCAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTACATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTCAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAGTTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATCAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATAGGCTGAATGGATAGTTTATGGGTTTATTTGCTTATGGCGTATCAAGTCTGAAACAGGTTATGCCATTATATAAAGAGGCGGGAATATAATAAATTTTAAGTAATATGACTAATTTACAGATTGAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 56569-56003 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYLW01000023.1 Photobacterium iliopiscarium strain NCIMB 13481 CFSAN065520_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56568 28 100.0 32 ............................ CAAACAGAAGCATCAAACAGTGGAAGTGACAG 56508 28 100.0 32 ............................ TGTAATAGTATCTAAGCGGTGATTAATCGCCC 56448 28 100.0 32 ............................ GCCGGAAGTGGAAATGTAAAAAAGCCCGCAAT 56388 28 100.0 32 ............................ ACTAAGTAATGATTCATCATCAACAAAACAAA 56328 28 100.0 32 ............................ ATAGTAAAAAACAGGCACCCCTTTATAAAAAG 56268 28 96.4 30 ....A....................... ATATCAATCATAGCTAATCAAATTTTCATA 56210 28 92.9 32 ..G..........G.............. AATAATACTCCTGATTATTTACGATCTTACTA 56150 28 85.7 32 ..G.T....T.......T.......... GTCAAAACAGCCGTCAGGAATACCAACGGTCC 56090 28 89.3 32 ..G.....T.......A........... TGCATTGCAACATCAAAAATCACTTTGTTTTC 56030 28 92.9 0 ..G.......................G. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTATCCCGCCACATAGGCGGCTTAGAAG # Left flank : AATCTTAAAAGTAAAAAAGGACTACAGGCTTTGGCTCATTGGTTACAAAATCCAAAGAAAGCTTTTAATGATAAGCCTAAGTCTAATAGTTGTAGTGACTATTACAAAGGGGTTTTTGATGCCTCTAAATATGGTGTTAGTACACGATCACCAGTGCTTACACAACGTTATGATGGTGTGTTTGAACTGTATATAAAAAGTGATGTAGAAACTGAACAGTTAATTATGGATAAAATCAAACACAGTGGACGCCATTACTTACGTGTTGGTAAGTTATGTTTAGCTGAATTAACGCAATTACCGGCTCGTATTCCTTCTCGTTATTGGGAAACGGTTGAAGATGATGAAGTTAAGAAAGGTTAAGTGAAATACCCTTTTTTATTCTGTTTTTGTAACTCATTGATTGTTAATGATGTATTTGTTGCCTTAAAAAAAAGGGGGAAATAAGCATTATTTACACAACATTATGTTTTATAATATTTTTATTGGTTTAATATCCA # Right flank : CTACAACCCCCATTGTAATCAAGATTTACAATGTGTCCCACCACATAGAAGAGTGCCATTGCCTTCGAACTTGGTGTTATCCGATCAAGAAAGGCCATTGAGGGATTAACTCAACGGCTTTTCGGTCATTTAAACAAAATTACGAATTAAACTCACTTACATCGATTTCAAGCAGTTTACCAATGCCTTCACCGTAAGCTGGATCTGCTTTGTAACAGTGTTTCAGGTGGCGCTGTTGAATTTCTTTAGGCACACCGGCTAGGCTACGCGCTGTATTATCAAACAGAATGGCTTGCTTCTCTGGCGACATCAAACGGAACAGATTACCAGGTTGCGAGAAGTAATCTTCATCTTCACGGTGATCCCAATGTGCTGCTGTGCCATTAAGGTTCAATGCTGGTTCTGCAAAATCTGGTTGCTCTGCCCATTGACCTTCGTTGTTTGGTTCATAGCCTAATGTGCTCCCAAAGTTACCATCAACACGCATCGCACCATCACGG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCGCCACATAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //