Array 1 24389-26033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHE01000096.1 Pseudomonas aeruginosa strain Pae_CF67.08t CF67.08t_contig_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24389 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 24449 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 24509 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 24569 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 24629 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 24689 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 24749 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 24809 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 24869 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 24929 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 24989 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 25049 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 25110 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 25170 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 25230 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 25290 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 25350 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 25410 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 25470 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 25530 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 25586 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 25646 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 25706 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 25766 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25826 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 25886 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 25946 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 26006 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36257-34908 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHE01000096.1 Pseudomonas aeruginosa strain Pae_CF67.08t CF67.08t_contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36256 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 36196 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 36136 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 36076 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 36016 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 35956 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 35896 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 35836 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 35776 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 35716 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 35656 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 35596 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 35536 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 35476 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 35416 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 35356 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 35296 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 35236 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 35176 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 35116 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 35056 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 34996 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 34935 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //