Array 1 262680-263074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFA01000002.1 Escherichia coli strain MOD1-EC6013 MOD1-EC6013_2_length_352596_cov_52.1729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262680 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 262741 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 262802 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 262863 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 262924 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 262985 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 263046 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 288778-289968 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFA01000002.1 Escherichia coli strain MOD1-EC6013 MOD1-EC6013_2_length_352596_cov_52.1729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 288778 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 288839 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 288900 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 288961 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 289022 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 289083 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 289144 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 289205 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 289267 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 289328 29 100.0 32 ............................. CCGAGGCCGCAGAACGCCGTGATATTGCGTTC 289389 29 100.0 32 ............................. GAAACTGAATCATCATTGATTACCCGCGAAGA 289450 29 100.0 32 ............................. CGACATAAAAACGTCCGGAGGCGCGTACTACC 289511 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 289572 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 289633 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 289694 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 289757 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 289818 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 289879 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 289940 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //