Array 1 87114-87372 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCLI01000006.1 Vulcanisaeta thermophila strain CBA1501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================================== ================== 87114 25 52.0 66 AGGC..GAAT..G..G.....GG.. TTGAAATACACACCAACGAGGAAGAGGCAGGAAAAACATATAAAACCCCACAAAACCAATGATACA 87205 25 100.0 48 ......................... TTCGCCTCCTCAACGTTGAAGCAGACTGTGTACCCAACCCATGTATCG 87278 25 100.0 45 ......................... TCTGGGTTCTGCATGAATTTGTTGAAGTGGTCCTCAGCCTTGAAT 87348 25 92.0 0 ..........T.T............ | ========== ====== ====== ====== ========================= ================================================================== ================== 4 25 86.0 53 GAAGATTTCACAAGAAGATTGAAAG # Left flank : CACAACACTACCCAAACCACCCACGACCAAGCACCTATCAGCATTATAAAGAAAAGCACGGGGAAACACCCTCAAATCCCTATCAATCACAAACCTACCCACACCAGGAACATGAAGCATGGGCACACCACAACGTAAAACCCCGACCAAATCAAAAAGAACATCAACCACAGGAACATACCGAAACCTAGGCGTAACAAAACCCCCAACCTCACAATCCCTATTAACAACAAACCAAAACACACAAACACAAAACACCTCACACTTATAATCCACTGCCCCTCACCATCACAAGTTTCCATCAAGGCAATGAACATGCTAATCCCCAACCTCAGCAAGTTAACCCATAACATCAAAGGCAAAGCCACACAATTAAAAAGAACACCCAAAGTACAACTAAACACCCCAACTGTACTATATCGTGTGTTTTCTACGTTTGTCTTTTGTCTGTTTTTCGTGGGGATTGTTTCGTTGTTTCAGAGTTGAAACACCGTGGGAGC # Right flank : GTTAGTACATGATCTTGGTCGTTGCGAGGACTATTTCATAAATGGGGGTTTCGTAAAGGGGGTTGGGGGTGTGTTGGGTGTGCTTTTTGATGTTTTGAGTGTTTTCTCTATTGTTTGTTGTTTGGTGTTTGTTGCTATTAGCCTTGTTATTTGGTCGAGCCTCCTAATGCTTAGTACGTCAATGTACTGCCTCAGTAGTTCCGGTAACCACTCGGGTGACTTCCCAGCCCTCTCCCTTACGTAGTTCACCGCCTCCTCAATGGTGAATGTGGGCGTCTTTATCGGTATGAACCTATCCATGAGCGCATCCCACCAATTCCTAGCCCTAAGCCTCGGGTTGAATGGGTTCGCAGCGGCAACAACCCTAAGGTTGTTGAATACCATGCTCACGACCTTACCCCTCTTGGCAACCCTAAGCACCCTCGTGCCGTCTGGCAGGACATCAGCGAGTTGGAGTATTGGGCTTATGTGGGTGTTCCTCGGTGCCTTGTCGAGCTCGT # Questionable array : NO Score: 4.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.30, 5:0, 6:0.25, 7:-0.89, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCACAAGAAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 87750-87310 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCLI01000010.1 Vulcanisaeta thermophila strain CBA1501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 87749 25 96.0 43 ................A........ TTCTCCTTAGAGTAGTTGATACATGACACGTGTTTACACAGAC 87681 25 100.0 44 ......................... ACCCACGTGTTGCTGTTCCTCCCTTCCTCAACCACCTGCTCTAT 87612 25 100.0 46 ......................... TGCATCAGGTCATGTAAACACTGGGCGTAGTTAGTGCTCTGTATGT 87541 25 96.0 44 ................A........ ATCCCATGTCCAAGCTTCCTGTACATGTATACACGTACCCTGTT 87472 25 100.0 45 ......................... ATCAATTCATCAAGCGCCGACCTAATAGCCAACGCAGCAGCAAAC 87402 25 100.0 43 ......................... GTTAGGTTGTTGAGATTCAGCGAGTTCAGGTTGGGGTAAACGG 87334 25 84.0 0 ............G..G.....G.G. | ========== ====== ====== ====== ========================= ============================================== ================== 7 25 96.6 44 GAAGATTTCACAAGAAGATTGAAAG # Left flank : GGTGTCGAGGGCATGTTCGTGGGATGTGGAAGGTCCACGGAAGACCTTCCACCTGATTTAGAGAATTTGCGTAAAACAAACATGAACTAACCCATAGACTTAAATATCATTCACGGAAACAATTCAACCCCAAGTGAATCATTCGCACGGAGCCGGTCCTTTTTAAATCCTTTTAAGCTCATCGAAAGGAATTGACAAAGCATAAACCCACGCTAACAACCGAGAATTCACACAACTTAGGATTTGATTTTCACGAAAACGTGAAACCTCAGTATAGGGGTAGTTGTGCTCAATGTTCGTTTAGGTTGTATTGCCTCGTGCATTTTCTACGCTTGTCTTTTGTCTGTTTTTCGTGGGAGCAGTTTCGTTGTTTCGGAGTTGAAACACCGTGGGAGCAGGCATGAATCAGGAGGATTGGGAGTTGAAATACACACCAACGAGGAAGAGGCAGGAAAAACATATAAAACCCCACAAAAACCCACAACAA # Right flank : AGCGTCGTACCCTACACCACACTCTTTCAGCCTCTAGGTAGCAGGGAGATTGGGACCTCCAGGGGGCCAATGCCCCTCGATAAGGTGCATGCCGATTGTGCCTTCATGGGGCTTATTGCTCATGAAACTCTACGTGGGGTTTGTGGGGTGTTCTCGTTCCACTTAAAATAACATTCACCTTGGTGTTTCCCTGTATGCACGCGCGGGAATTACTTATTTTAAATGATGTGCCGTGTCGATGATGCTTAGGAGGTCAAGGGGGATTAGCGGGTACATTGAGGGGGCCCTTAGGGTCATCGTGGCTGCTAGGACTGGCAGGATTAAATGTGGTGATGCCCTTGATTCCCTGTGGGAGTTTCTTACGAATCTTGATTATGAGTTGAGGAGGGGTGTTGGGTGTGAGGCGTATTTTAACTAGTGGTTTTAATTGACCTAACCATTCCTCAACAACTAAACTCCATCTAGAGGATGCCCAAGGGGTAAACTCCGCAAAAACTAAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCACAAGAAGATTGAAAG # Alternate repeat : GAAGATTTCACAAGAAAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 316960-317611 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCLI01000001.1 Vulcanisaeta thermophila strain CBA1501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 316960 24 91.7 44 ..........C.A........... AGAGTACTCTATCATTCAACGCCCATTGAGGCACCTTGAGCATT 317028 24 91.7 42 ..........C.A........... ACTTTATTGCCCGTGGTGATTAGGACATCATTCCTCTCAAGG 317094 24 91.7 51 ..........C.A........... ACCCGTACGTGAACCTCTACACCGTAGGCACTGGCTCGTTCAGTGTCACTG 317169 24 91.7 39 ..........C.A........... ACCAGGATGTACTTGATACGGTACGACCAGTCCCTGTAA 317232 24 100.0 47 ........................ ATCTTCTAAGCCCATCACAACTAGTGTTGGGGCTGTTCCTTCCTTAA 317303 24 100.0 47 ........................ AACTGTGATGCCCATTATGTTAAGGGTTTGCGGTATGCATGGTGTTA 317374 24 100.0 45 ........................ GTAGCCGAAGTACTCAAACCACGTGTGGACGTAATCGTAGAATAT 317443 24 100.0 46 ........................ ACGTTCTCATAGTGTTTATTATTATCTCTGAGGAACACGCTATGTG 317513 24 100.0 51 ........................ AGCAACGTTATTTTCTTTGTTCACGGCATTTCCAGGTTCTAAATCAATCAA 317588 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 10 24 96.7 46 GAAGATTTCATATGAAGATTGAAA # Left flank : AACTTCTCCGTGAAGTTTCCGCGTTATTTAGAAATTATGTGTAAAATCAACGTGAATTAACCCGTAGGTTCAAAATAATGTTCATGATAACAATTCAATTCCAAATAGACTATACGCACGGAGCCGGCCCCTTTTTAAATCCTTTTAAACCCTTATAAGGCATAAATGATCCCCTAACCACACCACTAAGTATTGGCACCGTGCAATATGGAGGTTTACCTCCCACGAAAACGTGCAACTCAATGCGTGGGGCGGTCGCGCTCAATTCTCATTTAGGTTGTATTGCTTCGTGCATTTTCTACGCCGGACTTTTGTCTGCACTTCGTGGGAACGGTCATGTTTTTGGAGAATTGAAGTACCGTGGGAACATTAATTCAATTTCTAAAGATTACCATGAGAACAGGCACGAATCAATGAAAAAGGAAGTTGAAATGCGCACCAACGAGGGAAAGGCAGGAAAGAGGAAAAGCTTATAAAACCCTAGAAAAACCCACAAACCG # Right flank : AGTTGGTGCATGACGTTGGTTATTGTGAGGACTATTTCATAAATGGGGGTTTCGTGAAGGGGTTGGGGTGTGTTGGTGTGGTTTTATTTGTTTGTTACTTAGCAATTTGTTGCTACCAACCTCGCCATTTGATCCAGGTGGTGGGGGTGGTTTAGGCTGATTGTTCCTGGGTAGGTTCCTCATCCTATTCCTCAATACGGAATACCCCTCATTATGTCGTGATGATTTACATTAGATCTATTACGTGGTGGGAGCCGCGTAACGAAAACCGAACCCGTCGCTTTCCAAGCAGTCTGAAAAGCCCGGAGCCACCTAAAGCCCCAGGCTGGAATGGGCAGCAAACCACTTACTAAACTTTAAGCCCAGGAATCCCATGCCCACAAATCCCACGTGGAGTTTCATGAAGAATGAGAGGAGGTTTTTGGTGGGCCCGGTGGGATTTGAACCCACGACCTGCGGGTCTGGAGCTTCGGCGATTTACCTCCGCCGCTCTGGGCCTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCATATGAAGATTGAAA # Alternate repeat : GAAGATTTCACAAGAAGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //