Array 1 132241-122320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJML010000006.1 Bifidobacterium pullorum subsp. saeculare strain An775 An775_contig-115_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 132240 31 100.0 35 ............................... TCGCTGGATCCCGACACGATCGTGCGGATCATCCG 132174 31 100.0 40 ............................... GTCGCAACCGTGGCCCAACACCACCCCATACTTGCTGGAG 132103 31 100.0 36 ............................... GTCGTAAATCGGATAATAGTCGGCGCTCAAGTGCAG 132036 31 100.0 35 ............................... CCGTGCTTGTCGGCGGTGGCGTCCCTATCGTCAAG 131970 31 100.0 35 ............................... AACAGCGAATAAGCGGTATTGTAGCGTGTCCCGTG 131904 31 100.0 37 ............................... AGTTCGCCATAGACGACGCTCAGGTCGAGGGCCCCAG 131836 31 100.0 35 ............................... ATCGCTGATTGCGGTAATTTTCCCAACAAAATCAG 131770 31 100.0 35 ............................... CATACATTGCAGACTTGCAGGCGGGGTAACGAACG 131704 31 100.0 35 ............................... AATCCGTCGATTATCGCGTCGATTGCCGTAACCGG 131638 31 100.0 35 ............................... CTTTCGTTGCTCTGACGATTGTGGAAACAATGATG 131572 31 100.0 34 ............................... GAAGCGCCGGCCGGACAGACGCTGAACCTGGTGG 131507 31 100.0 35 ............................... CATACGGAGACGAATAGGTTTTGGGCGGCGCCCCG 131441 31 100.0 37 ............................... CTTACCTTGTTTTGTCTTTCATTTCTCGGCGTGTCGG 131373 31 100.0 37 ............................... GTCGGCAACGGCAACAACGCCGACATGGTCAGCCTGG 131305 31 100.0 35 ............................... ATCACGGCGTCGCTGAACACCGACCCGTCGGACAG 131239 31 100.0 34 ............................... AACGAGGAATACGGGACCGACATCCCCCTGCCCG 131174 31 100.0 36 ............................... TGATCCTCGAAAACGACAATGAAGTAAACAAAAACG 131107 31 100.0 38 ............................... TGTTCGCTGATTGGGTGGCGGCCCATTGCGTGGTGCCG 131038 31 100.0 34 ............................... ACGTCGGTATGGTGACGTTCGACGCGGAACTAAG 130973 31 100.0 39 ............................... ACGTTTTGGGAAATGAAAGAATGCTATATTCGCGGCACG 130903 31 100.0 38 ............................... CACAGAGTGTGGGCAAAATGTGGGCAAGGAACTTGACG 130834 31 100.0 34 ............................... GTGGACGCGGCGGAAGCTCAAGCCGAGGCGGAGG 130769 31 100.0 36 ............................... GCGTCAAGCACCGCACCGTTCGCTGATACCGTCTCG 130702 31 100.0 35 ............................... CCAAGATTGACGCCAAACAGCCATCGCAAAAAACG 130636 31 100.0 35 ............................... TGGCCCGCATGCTGCATCCACTTCTCGGAATAATG 130570 31 100.0 36 ............................... AGGGTGAGTTCGCGGCCCATGGTCCCGTCGTCCAGG 130503 31 100.0 34 ............................... TGGACGGGTACCGGGTCTACCGCCAACGTGGTGG 130438 31 100.0 36 ............................... AAAAAACCCGGGAGCGCCATACACATTAAATGCCGG 130371 31 100.0 36 ............................... CATAATTGGTCTCCTTATGAATATGGGTCCCGCACG 130304 31 100.0 34 ............................... CATTGCTCGCCGTCCCAGGTGAGCACCTTGACGG 130239 31 100.0 36 ............................... CCTCGTCGGCGACGAACGTGCTGGTAGTGGTCACGG 130172 31 100.0 37 ............................... GAGCATCGACAGGAACGCCCGAGATACAGACTCGGGG 130104 31 100.0 35 ............................... GCTCGATGGCGTTCGCTTTCTCACGCATCTTTATG 130038 31 100.0 37 ............................... GTCTGGCTGATGACGCACGACGTGTGCGCGCACCCGG 129970 31 100.0 37 ............................... CATCGGCATCACTTTGAAGACCGCGATGGATTCCATG 129902 31 100.0 34 ............................... TGGTACCGCACCCAGCAGTTCTGGACCACGAGCG 129837 31 100.0 35 ............................... ATGGATCGGCGCAGGCAGACGGTGCGACGGGACGG 129771 31 100.0 34 ............................... ATGCTGGCGTTGTACTGGTCGGTTAAGTTGGCCG 129706 31 100.0 34 ............................... ATCAACACTTTCACGGCCTGTTCGACGGTTCGGG 129641 31 100.0 35 ............................... ACGATGATCATGGCATGGGGAGCCGCCGCGGTGAG 129575 31 100.0 36 ............................... TGCGACTGCCTTTGCGATGTCCGGAAGGACGCCGAG 129508 31 100.0 34 ............................... TTGAAGTTCACCAGCCAATTATTCGGATTGAAAG 129443 31 100.0 34 ............................... TTGAAGTTCACCAGCCAATTATTCGGATTGAAAG 129378 31 100.0 34 ............................... GGTGAAGCATGGCTCCAGGGCGTCGAAGACGAGG 129313 31 100.0 38 ............................... GCGGCTGCCGTGTCGTTGGCGATATCGCGGCTGGCGTG 129244 31 100.0 35 ............................... CGATAGGAACACGACAACATCCGGCGCGCCTGCCG 129178 31 100.0 35 ............................... TCGACGAACTGGTCGAATATGCCGCGCCGCTGGTG 129112 31 100.0 34 ............................... CTTACCCCGCCCGCCTCGCTGGAATGCATGGAGG 129047 31 100.0 34 ............................... AATCGAACAATCTCGTAATCAGGGAGACATATGG 128982 31 100.0 34 ............................... TAGCATATCGTTAGGCAATAGGATGGCAGTCAGG 128917 31 100.0 34 ............................... ATCCAGCAAAAAGCGCAGGTGACTAGCGAGGTGG 128852 31 100.0 39 ............................... CATAGGCAAGAGTCGCGTGACAGGGCGTAGTCAGTCGGG 128782 31 100.0 34 ............................... TCTGCAGGACGAATCCGTTGGCCGACGCGGAGAG 128717 31 100.0 35 ............................... CTTCACACGACACGCCGTGCAAGTTTGACATGGCG 128651 31 100.0 37 ............................... CATGTATCTGTATTGCCTACATTAAGGGTGGTTGCAG 128583 31 100.0 35 ............................... ATATAGATAATGGGTTTGGTGCCCCATGCGGCCTG 128517 31 100.0 36 ............................... TTGTCGGGGCGTGGAATATGAGAGTCCGGCCAGTGG 128450 31 100.0 33 ............................... ACCGAATCCGTGTTATCGCTGACGCAGCGCAGG 128386 31 100.0 34 ............................... AATTAGTGGCCCTCAGGGGCGGGTCGAAGCGGGG 128321 31 100.0 36 ............................... CATTACGGTTAGCGTTGAAGCGCCGAACAGGCACGG 128254 31 100.0 36 ............................... CCGATATCGCCGTCCTGTCCGACTTGTCGTCCACGG 128187 31 100.0 38 ............................... AACTCCCGACGCCGCCACCAGCACCCGAATGGGTGTGG 128118 31 100.0 36 ............................... CGATGAAGTGGCGCAGGCCAACGAAAAGGTAGACGG 128051 31 100.0 35 ............................... ACCGAATCGGGCATCCGATGCTTGTCCAAGGTCGG 127985 31 100.0 36 ............................... AAGAACCTCGGCCTCACCTCCCACGCCGAGGAGGAG 127918 31 100.0 36 ............................... TTCTCCTTTATTGGTTGATTGGTTGGGTTAGAAGGG 127851 31 100.0 34 ............................... ATACCATTATCCTTGCAACAGCAGAAAAAGAAGG 127786 31 100.0 34 ............................... AATGGTAGATCAATTCAGAAAACGAAACGCCGGG 127721 31 100.0 34 ............................... AATGGTAGATCAATTCAGAAAACGAAACGCCGGG 127656 31 100.0 35 ............................... ACCGATTCCGTGGCGCAGATGGTCGAAAACGGGGG 127590 31 100.0 37 ............................... AGCAAGCTGGTCGACAGTAAGCATTGCAATCTGATTG 127522 31 100.0 34 ............................... AGTTAGGAGTCGCATCATGATGCGTGTCATCCAG 127457 31 100.0 35 ............................... GATATTCAGCCTGTTATGTCAAAGAAGAAGTGACG 127391 31 100.0 34 ............................... TTTGACCTCGAATTGGTGGCGGAAAAGGGCCGCG 127326 31 100.0 34 ............................... CATCCTTTTTAGTGTCGTGCTGCGCTGGTCATCG 127261 31 100.0 36 ............................... CATAGGTCCGTGTCGCTGATCCACGGGTGCACTCCG 127194 31 100.0 37 ............................... GTGGAGAAGTTTAAACCGAAAAGACCACCGATGACTG 127126 31 100.0 36 ............................... AGGTCGCCGCTGTAACCGTCGCAACGGAGGCGGATG 127059 31 100.0 35 ............................... TATTTGGGAATGACTATGGCGGAAATCATGCCCTG 126993 31 100.0 34 ............................... CTAATATCCGAAGTATTCGCGGCAATACCGGTAG 126928 31 100.0 40 ............................... CCGGAAAAGTGTGGGCAAAATGTGGGCAAAACCGATAGAG 126857 31 100.0 34 ............................... ATGTGGGTGATGGTGATGGGGCATCCGTCGTGGG 126792 31 100.0 34 ............................... CGACGTCCGTCGTCCCAGGACGTCCTCCACGATG 126727 31 100.0 35 ............................... AGCATCGCCGGCAGCAACCTCTCCGCCGACCAGGG 126661 31 100.0 34 ............................... ATGTAGATGATCGGGATGGTGTCCCAGCGGGCGG 126596 31 100.0 36 ............................... CAGCCGGACATGGATAGAGATGATGTCTACGACTAG 126529 31 100.0 34 ............................... TCGATGACGCAGTCAAGGATCGCAGGCTTCATGG 126464 31 100.0 35 ............................... ATGACCATAGGAGCATCACCAGCACCCTGTAGCGG 126398 31 100.0 35 ............................... TCGTTCTCGGCGAGGTCGGACTGGATCTGTTCGAG 126332 31 100.0 34 ............................... GTGCTTATTGTGTGTGCTGCGCCCCGCTCGCCAG 126267 31 100.0 34 ............................... ATATCCAGCCCAATGGCTGGGGAAAGGAGGTCTG 126202 31 100.0 37 ............................... ACAGGTTCGGTGCCACATTCTCCGCCAATCTAGAAGG 126134 31 100.0 36 ............................... ACGCGCCCTCCGGACGCCACGTGGACGTACGTCCTG 126067 31 100.0 36 ............................... TGGTAGTGGTAGTTGGCCCAGACGTCGACGTCACGG 126000 31 100.0 39 ............................... ACCTATTGGCAGGCCTCCGATGTATGGTTGATCTGCGAG 125930 31 100.0 37 ............................... TATCAAGCGCTCGGCATCAAGAACCTACCGATGAAGG 125862 31 100.0 35 ............................... ATGCCCTCCCCTCGAAGTTGGAGGTCATGAAGCCG 125796 31 100.0 36 ............................... CATCGTGGTCACCTCCCCTACTATCTACGACATGGG 125729 31 100.0 36 ............................... AAGCTCCGGAACCACATAGTCCTCGACGATATATCG 125662 31 100.0 35 ............................... AACCGGATCGTCAACAGGACGTCCGGCGGACACAG 125596 31 100.0 37 ............................... ACCGTCAACAACAACACCACCATCAGGCCGGGAAGAG 125528 31 100.0 36 ............................... CTCAGCGTGTTCATTACCGCCGACTTGTTGGTTATG 125461 31 100.0 35 ............................... GTGTAGTGCGGGATGTCGGCCACCAGGGCGGACGG 125395 31 100.0 34 ............................... TGCCGAACGTGACTCGTTGAGATTATGGGCGTAG 125330 31 100.0 35 ............................... CTCTTGTCTCGGCTCGGCGCAGGATCCCACGGCAG 125264 31 100.0 34 ............................... AAGATCAAGGATCCGTTGGCGTATGGCGCGTGGG 125199 31 100.0 34 ............................... TTGTAGGTGGCGACGATCCTGCCGTTCGTGCTTG 125134 31 100.0 35 ............................... ATCGGTACCGCCTCCCATATCGGAAACGATCCCGG 125068 31 100.0 34 ............................... TCGTACAAGTCCAACGTCGTATCGATCTTGTCGG 125003 31 100.0 40 ............................... TTCTTTTCCTCCGTCTTGTCGATCTTGTCGGATGCTCTGG 124932 31 100.0 35 ............................... ACCACGTTCGCCGCCCGCCGCCACCTCAACGCGGG 124866 31 100.0 35 ............................... AACCCGTAGCCGCCGTCCGACGCCGGATGTATCTG 124800 31 100.0 35 ............................... AACCCGTAGCCGCCGTCCGACGCCGGATGTATCTG 124734 31 100.0 36 ............................... AGGCTCGAAGAGATCACGCAGGTCCTGGCCGGCAAG 124667 31 100.0 36 ............................... AGGAATACCGGCAGGCGATTATCAACGTGGACATGG 124600 31 100.0 35 ............................... ACCTTGACGAACGCGCCCATCGTCAACTCCTCCCG 124534 31 100.0 37 ............................... ACGTTCTTCGGCGGGTTCGGCGCCTTGTAGTTGATGG 124466 31 100.0 35 ............................... CCGTCGCCGGTATCGCGGTAGGAGACGGCGGCGTG 124400 31 100.0 37 ............................... TGGTTGACGGTCTGCCGAGAAACGCCAAGCTCGTTGG 124332 31 100.0 37 ............................... CAGTTGATCTGCGCCTTGCAGGTGATGTTGCGAGCGG 124264 31 100.0 36 ............................... TCCCACGGGGGCGTGAGCCTCCTGTGTTTGGCCGCG 124197 31 100.0 35 ............................... CCAACGGTTTCACGAACCCGTCGGGTACACGGCAG 124131 31 100.0 37 ............................... AGCTTGCCCAACTGGATGCCGTAATAGCGGCGGGTCG 124063 31 100.0 35 ............................... TCCGCCTCCGCGAGGAGACCCATGACGGGCCGGCG 123997 31 100.0 37 ............................... AAATCGTTGTCCATGTGGACACGCCAATACCCGCCGG 123929 31 100.0 35 ............................... ACGCATGCAGTAGCATTCGTGGATGCAACGGAAAG 123863 31 100.0 35 ............................... TCAACATGATTCGTAACGAGGCCTCGCCGGAATAG 123797 31 100.0 37 ............................... CGCAGACGCCTTGCCCGTCGATGTGCAGTGCGTCGGG 123729 31 100.0 34 ............................... AGCACGTCCATTCCGTTGACGCCGTTCGCGCCCG 123664 31 100.0 34 ............................... AGGGACGCGATGGCCGAAGGGCAGATCTCGGCCG 123599 31 100.0 34 ............................... CGGACACGTCATGGCCATCGGACATCGATTTCAG 123534 31 100.0 35 ............................... ATGTTCTCCTGCGCCTGCTGCAGGGTCTTCTCTTG 123468 31 100.0 35 ............................... ACGGCAACGTCCTTTCTAGAATTCCGGTTCATCGG 123402 31 100.0 35 ............................... ACGGCAACGTCCTTTCTAGAATTCCGGTTCATCGG 123336 31 100.0 34 ............................... ACCTACTGGCAGATGCAGGAATGCTATATCATGG 123271 31 100.0 34 ............................... ACACGGTCGGCCAGCGGAGCGTAGGAATCGTCGG 123206 31 100.0 35 ............................... AGTCCCTGGTTCGACAGGCTGATGGTGACGCGTTG 123140 31 100.0 34 ............................... AGGTCGAATTTGCGCAGGATCGCGGTGACGTGCG 123075 31 100.0 34 ............................... CTGTGTCGTGTGTTTGGCTTTGAGTGTGCTGGCG 123010 31 100.0 35 ............................... ATCGACGTCGGCCAGGGCGACTCCACGCTCGTGGG 122944 31 100.0 36 ............................... TCTCAGGGCTGTCAAGACTTGTTGGTGGAGTGGTTG 122877 31 100.0 36 ............................... AACGGGTGGCTGCTGGACGGCGAACCGTATGATTTG 122810 31 100.0 36 ............................... AACGCGCGCGTCGAAACCGCCGCCGACAAACCGAGG 122743 31 100.0 35 ............................... AGGTCGGTGACGGTGCCGTCGCCGACGATGGTCTG 122677 31 100.0 36 ............................... AGTTATCACGCGGGTGTTATCGTCTTATTCCTTGAG 122610 31 100.0 35 ............................... ACCTTTGAGGTTATGGAAGGCGAAGCTGAAAACCG 122544 31 100.0 34 ............................... ACGCTTGAGATGGATGTTCCGCAGATCGAGGACG 122479 31 100.0 34 ............................... GAGTTCGTGCATCTTATTGCCGGCCCGGAACTCG 122414 31 96.8 34 ........................A...... ATGTCGAGCTTGCCCACGGCTAACGTGGCGCTTG 122349 30 74.2 0 C......TT..AT.........A...-..C. | ========== ====== ====== ====== =============================== ======================================== ================== 150 31 99.8 35 TCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Left flank : AGGATAGCGGCTTTACGGCGACTGCGGTTGCGCTGCTGCTGCGTAGATTTCGACTCGATGCGCCCCGGTCTTGTACGTCAAACAATCGGTGGATCTTTCAATCTGCCCATAATCCCAACGAATCTACGGCAACTTAACTCCGGTAGACATGCCAGCGATACGCCGATGACAAGCCGATGACATGGCCCACGACTACACGCTTAAGCCAGACCATTTGGCAGTGATTAATATTGGCGTTCAAAAAAGTAGGGTACTCTTATCTCGACGTCTACGAGTGCAGTGCGAGCCATAAGCAATCAGGATTACCCCCTAGGTTCGCACTACATACGCAGGAGTCCGAACGCCGTAGAAACGTGCCTCTGCAGCTTGATAATCGTATAGTGAACGCTATTCTCGGTAGTATTGCTCACACAGCACTCAATACGCTACCGCAGCAGCACATTGTTCGCAATAACGGATGATATCGTCCACATAGCGGAATATGCTGTCCGTTGTTGCAG # Right flank : CTGTGGCACTAGCAGTAGCCATGACTGAGACGACTCCAGCTACAATCTTGTCCATATTGACGGTGCCGGCAACAGTCTTGACATCGGCAGCAGCGCTATCATGGAGCATGATGATTATGATTCGAGACGTTCAGGAATTAATGCACCGTCGCCGAGGTTTACATGCTTGTTCGATAAATTGACGATGCCAATCTATCGCCTTTACATATCGCCACATCCAGTATCGCCGAATATCTCACACGCAAGCATAATCATGATTGGTTTTCCTGTCTGGATTAAAAATAGCTTGGGCACGACACAGCTCAGGACTTTCCGCCCAAGGATTCGATCGTGCTTCAGCCAAAGACTGAAGTTCCACGCAGTGGCGACGCCCCGTCTCCACCAGGAAAGTTCATTTAAGTAAACAACACTTGACTTGTTAAGTAAATAGGCGTAGATTATTATTATGAAACGCAAGGAACTGGAGAAAAGGCTCAACCGTCTGGCCAAGGACCATGGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 194971-188597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJML010000004.1 Bifidobacterium pullorum subsp. saeculare strain An775 An775_contig-115_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 194970 28 100.0 33 ............................ ACTTGGGAGGCGTATTTCGGACGCATCTGGGCG 194909 28 100.0 33 ............................ GTACCAGTCGGTGCCACCTCGGGCAAAGGGCTG 194848 28 100.0 33 ............................ ACCGACAAGGACAGGGACGGTCGGATCATCAGC 194787 28 100.0 33 ............................ TCACACCAGCCGCACCATTGCCAAAGAATTGCG 194726 28 100.0 33 ............................ CGAAATGGGTTGAGCCGGATAATGGCAGATTCA 194665 28 100.0 33 ............................ AGGGGCATAAGCGCGTGGTGGATCCACCACTGG 194604 28 100.0 33 ............................ CTGCGGGAAATAGGTCAGGAAACCGCCCAGCAG 194543 28 100.0 33 ............................ TCAAGCTGGGTTATGGTTCTATCCCATTGGTTG 194482 28 100.0 33 ............................ ACCTGCACCAGGTAATAATCCGGTATACGCGGG 194421 28 100.0 33 ............................ TTCCAGTGGCATGACGCCGGTGTATCCGAGGCG 194360 28 100.0 33 ............................ TTGACGAACCCGTGGGATCCGATGGATGCGAGC 194299 28 100.0 33 ............................ GACTTTGACATCGCGTTCGCGCGCATGCTGCCG 194238 28 100.0 33 ............................ CGAGTCGGCGGTATCGGACATCTCGTCTCCGAG 194177 28 100.0 33 ............................ CTGGGCGTGTCCGGATTCCAGCCCGCCGTGCTG 194116 28 100.0 33 ............................ ACTGTTCTTCGGCACCAGTCCCGTATTGGACAC 194055 28 100.0 33 ............................ GCGTTCGCCGCGATCTTGTCCGCCGTGACCGCG 193994 28 100.0 33 ............................ CGCCACGCGCACGAACTCGACCCATGCGGGCAA 193933 28 100.0 33 ............................ CAACAGCGCAGCCGGATATGGCTGCACACGTTC 193872 28 100.0 33 ............................ CTGTACGTCTATATACCCATGTCTGTGCGGAGC 193811 28 100.0 33 ............................ ACGATGATCTTGAGCAGGTACGTGAGAACGATG 193750 28 100.0 33 ............................ GTGGTCGCCGGTGTAGGCTGCTGGAGCCATGTC 193689 28 100.0 33 ............................ GTCGACCGCAGACGTGCCGGCGGCCTGCCCGCG 193628 28 100.0 33 ............................ TCTGCGGACTGTCTGGACGTTGAGGTGCCATCG 193567 28 100.0 33 ............................ AGAGGTGTCGTGATGGCTCTGGCTTATCGGTTG 193506 28 100.0 33 ............................ CCGCTGACCCTGATGATGCCGGAATTAGCGTTG 193445 28 100.0 33 ............................ GACCACGACCACGTTGTGGGCCGAGCCACCGGG 193384 28 100.0 33 ............................ ACCCGCCTGCAACTGACCGGCCAGCAGCCCCAG 193323 28 100.0 33 ............................ CACCTTCCATCGGATGCGGTGAGAATCGCAGCG 193262 28 100.0 33 ............................ ACCACTATCGTTGTGTTCCTTGCGTTCGCGTTG 193201 28 100.0 33 ............................ ATTAGTGTTAAAATCCTTACCACCATCGTCGTA 193140 28 100.0 33 ............................ GTCCAGTCGGCGATCTGGTCCCATGTGGGCTGG 193079 28 100.0 33 ............................ GCCAAGTTCAGGCCGACGGAGCATCCGGAACTG 193018 28 100.0 34 ............................ GCGATGCGCAAACGGCGGCGGTTCCGTCGTCAGT 192956 28 100.0 33 ............................ ACGTCGTTCACGGTCTGCAAGTCCAGCGTATCG 192895 28 100.0 33 ............................ CACTGGGTGGGTGGTGGTAGGCGGTGTCTGCGG 192834 28 100.0 33 ............................ TTCTACGGCCACGCCGAGGATGAGCTTCCGACG 192773 28 100.0 33 ............................ GACGACGTGCTGGCCGGAGGCGATGGCGTCCAG 192712 28 100.0 33 ............................ GGGATGTTGAACCTATTACGAAAATCTCCGACG 192651 28 100.0 33 ............................ CGCGTCATCCGAGGGCGTCGGCGTAATCTACAC 192590 28 100.0 33 ............................ TCGAACCCAGCCAAGGACGGCCTATGGGGCACG 192529 28 100.0 33 ............................ AACGTTGGATGACACGCATCTCGGCAACCCGGA 192468 28 100.0 33 ............................ AGGCGGATGTGGTCGCGCACCCATGCGCTCACG 192407 28 100.0 33 ............................ CTGGGCGTGAGCGGTTTCCAGCCCGCCGTCCTG 192346 28 100.0 33 ............................ TAGTTGACGCCGATGGGCTGATAGCGAGTGGGA 192285 28 100.0 33 ............................ GCTCCCGCCTCGTTGTATCCGACCGGGTAGAAG 192224 28 100.0 33 ............................ GAGCTTGGCGTGGTCAGGGTCCGGTCGGACGGG 192163 28 100.0 33 ............................ TTGAACGAATCGGCGAGGCGTAGTGCTGTCTCG 192102 28 100.0 33 ............................ CGACGATGACGGCAACCCGCGCATCCCCGATTA 192041 28 100.0 33 ............................ ATGACATTCCGCCTGATTTCCATTGATGCGAAA 191980 28 100.0 33 ............................ CTCCCCGGCGACGCTGACAGCGACGTCGAGGAG 191919 28 100.0 33 ............................ ATCGACGACCTGCGGCAAAGGCATCCAAACCGG 191858 28 100.0 33 ............................ GCGCAGTTGGCCCAGTTGAAGACGAAAGGCCTG 191797 28 100.0 33 ............................ TTGCAGGGTACGCTCAACCAGGTCACGTGGACG 191736 28 100.0 33 ............................ TCGCCTTTTGCGGCATAGGCGGCCAGCCCATAG 191675 28 100.0 33 ............................ TCGTTCGATACCGAGCAGCAGATCAGGAACCTG 191614 28 100.0 33 ............................ TCGGGCACGCGGTCATCCTCGGGACGTTCGGCG 191553 28 100.0 33 ............................ TTAAGCCTGATTGGAGTCAGATATGCGGTATCG 191492 28 100.0 33 ............................ TGACAACGAACTGACCGTGACGAACGGCAACAA 191431 28 100.0 33 ............................ GGGATAATGAACCGTACCAAGTCGTGCCCGATG 191370 28 100.0 33 ............................ GGGCGTCGCATTCCTGCGCAATGTTCCACGTGG 191309 28 100.0 33 ............................ TGCGACCTGTCGTGTGAGCGCGTCGGCGATCTC 191248 28 100.0 33 ............................ GGTAGCGAGTCGTTCGACCTGAATGTGAACACG 191187 28 100.0 33 ............................ CGTCGCTATCTGGACGAGCAGCACGACGAGGAC 191126 28 100.0 33 ............................ CGGATGGACTCTGCGGAATCGTCGATCACCGCC 191065 28 100.0 33 ............................ TCCGGCTGAGTCCTCGCGTTGACGAAGTACCGG 191004 28 100.0 33 ............................ CAGTCAAGGCACCAGGACTGCCATGCCCAGTCG 190943 28 100.0 33 ............................ AGCTGATCCTGCGTCGGAACCCACGGTGAGCTG 190882 28 100.0 33 ............................ GCGGGGTCGGCGAGCTGGATGACGATGGACTTG 190821 28 100.0 33 ............................ TACGACCCATTCGCTCCCCGTGAACTCGACGCA 190760 28 100.0 33 ............................ TGGACGCGGAGGACTTGATCGAGCACGCATTCA 190699 28 100.0 33 ............................ TGCATGACGTACTTGAACAGCTTGAACGTCTCG 190638 28 100.0 33 ............................ TCCGGCAGGCCGGTGTAGAGGATCGACGGACTG 190577 28 100.0 33 ............................ TCCGGTACAGCGAGCGCGTTCGACAGCCGGTTG 190516 28 100.0 33 ............................ ACCATCCCAATGCACGACACCTACGACAACGTG 190455 28 100.0 33 ............................ TCGCCGGGGGATAATGGAGGCATGGCTGGAGCG 190394 28 100.0 33 ............................ AACCCGAGCCTACTATTCTCAATAAGGCTCGGG 190333 28 100.0 33 ............................ GACGGCAAGGGTGCCAGAACCGCCGAGCAGACC 190272 28 100.0 33 ............................ AATGACGTCTAAAATAACCAAGGAGACAATTGT 190211 28 100.0 33 ............................ CTGCGGTGTCGGCAACAACCTTGTCAGATCCAG 190150 28 96.4 33 ..G......................... GTAAGCTGGAATAGGGCTTTTTGGCATAGAATG 190089 28 100.0 33 ............................ CGGACGTGAGCCGTGGCGATGACATGACGATGG 190028 28 100.0 33 ............................ TCAGTGATGATACCCGCCTTGATGTAGGAGGCG 189967 28 100.0 33 ............................ GCCTATTGGGGTGCCACCGGTGGTGTGGAGGCG 189906 28 100.0 33 ............................ ACATTCGTGCTCACAACGGTTCCGCCGATGGTG 189845 28 100.0 33 ............................ TCGTCCATGCCTTCTCGGATGAGACGGAACGCC 189784 28 100.0 33 ............................ TGGAACACGCTGACCGAAGCCGATCGCGAACCG 189723 28 100.0 33 ............................ ACCTACCGGGACATGCTCAGCAAAACCGGCGAC 189662 28 100.0 33 ............................ CGGCCGACGCGAACGCCGACAGGACGCCGACGG 189601 28 100.0 33 ............................ GAGGTGTGCTGTGTCGTTGACATGGTTGTCTCC 189540 28 100.0 33 ............................ TCTATTTTCGTGATGTCCCCCAGGTTGGGGACG 189479 28 100.0 34 ............................ GGCGTCGAACCAGTCAAGTCCCAGCGATTGCAGT 189417 28 100.0 33 ............................ GTTCTTGGCGCTGCTGGTGCGGCGTTCGATGAG 189356 28 100.0 33 ............................ TTCATCGAACATTGGTCGGCTCCTTCGCTCTGG 189295 28 100.0 33 ............................ GCTGATGGCGCGTTTGAAGTCGGATGCTCGCCG 189234 28 100.0 33 ............................ CCACGGGAGGCCATGATGGGCATGACATCGGAC 189173 28 100.0 33 ............................ TGGTTTCCGCGACGTGCGATACCGTCTTGCATG 189112 28 100.0 33 ............................ GGAGTCGAACCAAGCACGCAGACCCTTGTTGAT 189051 28 100.0 33 ............................ GTCTTTGTAATCCTGTTTGCTTTCGATCTGGCG 188990 28 100.0 33 ............................ CCATACAGCCATGCACCGTCTGATTGGGTGGTG 188929 28 100.0 33 ............................ TTGTTCACGAAGTAGTCAGCTTCCGAAACGGCG 188868 28 100.0 33 ............................ GAGAACATGCCCGTGGGGTCGGGGAACGACTCG 188807 28 100.0 33 ............................ TCGAACGCGGTCTTGAACCGTCCGGTCACCACG 188746 28 100.0 33 ............................ CTCCGGATTCCGCTTCTGCCACGCCCTCACGTA 188685 28 100.0 33 ............................ CACCACCGTCGGCTCGTACCGTGGGGACGCCGG 188624 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 105 28 100.0 33 GGATCACCTCCGCGTGTGCGGAGCAGAC # Left flank : AAGAGCGTCCGTTGGCGATCGTGAGCCTTGCCGTTGACGGCGATACCGGTATCGGGATCAAGATCACGAGCAAGACGCATCATGCCGCGGGCGATCTGTCGTTGAGCGGGTGGCGTGATGCAGGGCTTAATATGCCGAGCGTTGCCAGGTGTGCGCAGCTTGTCCGTTTTCGTGTCGATAGGCTTACCGGGTATTACGGTAGGTTGACTGCGGAAGATATCGAGGATATTGCCAACGTTTTGTCTTCCCTGAATCCGTCTGATTTTCTCTGGTTGAGCGACGACAATTAAGGTCATTGTCTCGCGTGCCCGCCTTTGTGACGGGTTTTTCGTCGAACAACCCCGTATCGCGTGGTATCCGGCGTGGAATTTGTTGCAGATGTCTGCCTGATGCTTGTTCCGCATCTCCCATCAAGTTAGGGGAGATGCGGAAAACTAAACTATATCAGTCGTGTCACGCGAGCAGACCGCGATCCTGTCACCGGAGTCATCGACGCCGCG # Right flank : AGTTGTATTTTACTGTGTTCTGAGCCAGCTGAATGGCGTGGAATATTTGATTTACGCACTGCGCAGGGTGAGTTGATGCCATGAATCTTGAGATTTGGAACAAATGGTATCGGATGGTGAGATTCTATGGAACAAACCGTTGCTATGCTCGGCGGTTCAGATTTGCGATTGTGTTGAATGCATTGTTCGCTCCTGTTGCCAGAGTGTGTGGGACGATGTCGATAGGTGATAACAAATCGGTCGTTTTGATATTCGTCATGCCGCAAGATAGTCCCGCATTAGGCCCGCCACCGATCCGCACGCAGCTTCCATCTCGCGAGGTGTAAGGCATCGTCCCCCCTGATCCCTTGCGACCGTGTAGGCTTATTGATAAGCGTTGCGATGCAGTACATGGTTCGCCTTTAATCGCGCTATATGTGATTGCAGTGTAAACGGTGGTGGACTGCATCGCCGGTTGCGACATTCCGCTTTTTCGTGAATGCGTACTACACGTGCGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCGCGTGTGCGGAGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 196183-197429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJML010000004.1 Bifidobacterium pullorum subsp. saeculare strain An775 An775_contig-115_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 196183 28 100.0 33 ............................ CGCGCTCGGCTCCCGCTACGACGCGGTGCAGGC 196244 28 100.0 33 ............................ TATGTTTGCCCTGCGAAGACTTGATGAGGTCGA 196305 28 100.0 33 ............................ CAGCGTGACGGCCGGGAAGATCGCCGCATTGGC 196366 28 100.0 32 ............................ GCCGGAGCCGACCAAAGCGCAAGCGCCACCCA 196426 28 100.0 33 ............................ TGCCGCAGCCTCGGCTTCCGCCGCGAAGGTTTC 196487 28 100.0 33 ............................ CGTGGATTACAAACTCTCACCCGAAACGGTAGA 196548 28 100.0 33 ............................ CACGTCCCATTCGTTGTCGGTCATCTGGTTGAA 196609 28 100.0 33 ............................ CCTCAGCAACGCCAAAATAGACAACTCATGGCT 196670 28 100.0 33 ............................ CAGCTTGTCCATCGTGTCGTCCCTGTCCGGAAC 196731 28 100.0 33 ............................ CAGCGATATGGCGAAGATCGACGCCCAGATGAA 196792 28 100.0 33 ............................ CGGATGGCGGGGGCGAGTTTGTGGGCGGTGCCC 196853 28 100.0 33 ............................ TTCGACCTTGAGCTCGTGGAGGCGGTTGACCAG 196914 28 100.0 33 ............................ CGCGCGCGCCAGATTCCCAGTCCTGGATTCCAC 196975 28 100.0 33 ............................ CGGCAGAGAGGCGCTTACGGAAAGGTGGAAACG 197036 28 100.0 33 ............................ CCATCCAGCAGACCTACCAGTCGCTGGCGCGAG 197097 28 100.0 33 ............................ CACGGTTTCGAGTTCGTTTTCATCGTCCACGTT 197158 28 100.0 33 ............................ CGCGCTCGGCGTCACGTCGTTGCCGACCGCGCA 197219 28 100.0 33 ............................ TTCGTCCGACGTGTATACCAAGAGTCAGGCCGA 197280 28 100.0 33 ............................ CTCCTGTTCGTTGGTGTCGTGGTCGCCGTTGAA 197341 28 100.0 33 ............................ CTCGCGAATGTGTTGAACGGGCCGGAATGGTGT 197402 28 96.4 0 .......................A.... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 33 GACCGCTCCGCACACGCGGAGATGATCC # Left flank : GCTTTTAGGTCGGAACGAGTTGACGTAATCGGCCAACGCCTCACCAACGCTAAGACCACGCATCCGTGCGAACGCGCTGAATACGTCCAACGCATCACTGTCCACGTCAATACGCGGCGACAAAACAGTGGAAGACATAGGCACCTCCCTTTGTAGCTTCATTTATCCAGCGTATCCCATCCACCTTGGGATACGCTCCGAGTGGATAACAACGCCCCCAAAGAGTGATAGTATCCCGGTCATCGATTAGCCCGATGATTGAGAGAAAAACATTCATCCGTGGCGCAACACGCCTAGTCAACGCTCTGCTTCTTTCAGAGCTCCTCCGAAAGCCGGCGACCATCAGCACTCCCCATATCCGCAGCCGGCTAGCGCGCGTAACATATATCGAAAGCATCCATTCCAAATATCGAGAACAACGCCACTCCACGACTCCGCACAACGTACGAATCAAACATTCCGCACCATCCAACCGGACCAAATCCCAATAAAATACAACT # Right flank : CCTCGACCCCAATGTGTGGGAGCCGGCCGCGGGATCAACCCCGCGCGTGCGGGACAGGTAGTTGCATTATATTGCGTTCCCGCCCGGACCAACGGCCCGCAATATTCGATTCGTTCACCGTAGAGTCCGCAGCAAGCGCACATCGATATCAAGGTAGCCGGCTCCAGCCCAAGAGTGCCACCATATTCTCAACCGACACAAATCACAGCCGCCTGAAGCCCATACCTGCTGAAGCCCATACCTGTGGACGCGTGTCACCCCGGTTTCTGCTATGCTGGTCAGCATCAATGGAGATAGGGGAACACTTGACCAACCATACACCACCCGCAGGTGCACCATCAGCAAACACACCACCTTCGAGCACCGACAACTTCAAGACCGCCACCCCTCTATTCGACGTCGGAATCCCCCTCGGTCTCTCCAAACAAACCCTGTCCGTATGGGCGAAAACCAATCTCGCCGACCCGTCCGACCCGAGCTATCTCCAACTGTGGCAGCAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCGCTCCGCACACGCGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //