Array 1 1062552-1065021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056907.1 Citrobacter freundii strain RHBSTW-00011 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1062552 29 100.0 32 ............................. TGACACAACCATTAACCGATTTACAGGACCAG 1062613 29 100.0 32 ............................. CGCACCCCCATTTTAGCGGCAAGCTCTGCGTT 1062674 29 100.0 32 ............................. GTAAAACAGGAACTGGAGAAGATTTCACAAAG 1062735 29 100.0 32 ............................. ACGAAACGGTATTCATGGGGCAATCGTGCGTA 1062796 29 100.0 32 ............................. GATAACAAAGTTACGCCATCAGTTGAATATGT 1062857 29 100.0 32 ............................. AAATCAGTGCAGGACAATATCTGTCTGGCGGG 1062918 29 100.0 32 ............................. TATAACTATTTTGCGTTGTCGAGCGATTCAGA 1062979 29 100.0 32 ............................. TAATCACGTAAAAACGAGCTCCAGATTATTAA 1063040 29 100.0 32 ............................. GGGGCTGCCCTCCCTTCCTCGATCACTTTTTC 1063101 29 100.0 32 ............................. TTGTCTGGGAATTCACGGCGTATTAGCGTATC 1063162 29 100.0 32 ............................. TATCAGGGACAATGACGATTGCAGCCAGAAAG 1063223 29 100.0 32 ............................. TCTTTAATACCGCTTTCGGTTATATGCTCTGC 1063284 29 100.0 32 ............................. TTTTCTTGCGGAAAATTCAGTATTTGAGAGAA 1063345 29 100.0 32 ............................. TGATTTTGTCGAACTGGTAGATACGAGGTAAA 1063406 29 100.0 32 ............................. CTTGCTGATAATCTTCGTATATTGTGCAGTCG 1063467 29 100.0 32 ............................. GGAGAAACGGCAGGTTAAAAAAGAGGATGCAG 1063528 29 100.0 32 ............................. GCCGAACGTCCGATTTATTGGGGCAGCAAAAA 1063589 29 100.0 32 ............................. TTGACCCTATCGCTGCAACGGCTGGCCGTCCT 1063650 29 100.0 32 ............................. GAAGCGGGAAAACAGCGCCAGGACGAACTACA 1063711 29 100.0 32 ............................. CGCGGTTAACCGCTCCACGCGTTCCGCGGTGT 1063772 29 100.0 32 ............................. GGAGCTGTGGTTTATCAGCAAAACATGACGTC 1063833 29 96.6 32 ............................A GCAGTACAAAACACCTTAAAAGTCGCAAGGAA 1063894 29 100.0 32 ............................. GTTTGTTGGCGTGGGTTGAGTAGCTAGCACAT 1063955 29 100.0 32 ............................. GGTTTATTTGGTGGTGGCGGTTCAAGCAGCAC 1064016 29 100.0 32 ............................. CTGATTTGGCGGCTAACCAAGCGCCCCACGTC 1064077 29 100.0 32 ............................. CGGACGGGATGGGGCAAGACATGAACAGCCAG 1064138 29 100.0 32 ............................. TGAGATGTAGTGTTACTGACGTTTACGCGCAT 1064199 29 100.0 32 ............................. AACAAGATTGGTACTGGAGCAATCCCGCGCCA 1064260 29 100.0 32 ............................. CCATTTGCTGACCTGCCGCCGCGCCTTGCTTA 1064321 29 100.0 32 ............................. GACCTGTACGCGGGAGGAGGCTTCTATTTCAA 1064382 29 100.0 32 ............................. CTGGTTAGTTGCTGCTTTTTCGTTGAGCTATT 1064443 29 100.0 32 ............................. GGTATCGAATGGTGAGGTGTATGAGGATTTTG 1064504 29 100.0 32 ............................. GGTTAATGGTTATAGATATCCGTGCGGAGACA 1064565 29 100.0 32 ............................. CCAGGCCCATGTTTTAAACGATGTCATCGCGC 1064626 29 100.0 32 ............................. CATTGTGGCGAGTGTGCGCCGTTGTCGTGGTC 1064687 29 100.0 32 ............................. GTGACTTTGCTCATTTTTGTTCCCCGTTCAGT 1064748 29 100.0 32 ............................. CTGTTGCTCCTTGCTTCTGTTGCTTCGCTAAT 1064809 29 100.0 32 ............................. ATCACTATCGAGCACCACTAGCGGCGGCGCTC 1064870 29 100.0 33 ............................. GTTCGGGTGACAAATAAAGTTGAGCCGGTTCGC 1064932 29 100.0 32 ............................. TTGTGACGACGTCACCCCACCGCATTTGCGAT 1064993 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCTGCTGGAGAGATTGAACCGCCTCAGCCTGCACCGGATATGCTGCCGCCAGCGATACCGGAGCCAGAATCGCTGGGTGATAGCGGTCATCGGGGGCATGGTTAATGAGTATGGTGGTTGTGGTCACAGAAAATGTACCGCCGCGTCTGCGGGGCCGCCTTGCCATCTGGCTACTGGAAATTCGAGCAGGTGTGTATGTGGGCGATACTTCGAAGCGTATCCGGGGAATGATTTGGCAACAGATCACACAGCTTGGTGGTTGTGGAAATGCCGTTATGGCTTGGGCGACTAACACAGAATCAGGATTTGAGTTTCAGACATGGGGTGAGAATCGGCGTATTCCGGTAGATTTGGACGGGCTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAGATTACGAGTTCTTTAATAATGTGGAATTGTTATCTAAAGGTTGGTAGGTTGTTTTGTGTTAAAAAAATCCTTTTGGAACAAGAGTATAGTTTTAGA # Right flank : GGAGGCTATCGGCACGCAGGCAAACGCCGTGGGGTGTTCCCCGCAGGCTCGGGGCAAAAATAGCCTTATAACTTCACCAAAAGTGGACTAAGGGTTTTTACCCGCTTTTGCCAGTTCCTTTACCAGCGGCAGCATAATGCGTACCACGTCGCGGCTACGGTGTTCTATCCTGCCCGGTAACGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGGTTCCAGTTGGTCGCTTCAACGGAGAGAACGGAAATGCCCGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTGCCTTTCGGATAGTCTTTGTTCAGACCTGGATTGGTGCTGGCAACAATACCGCGACTGTGCGCGATAGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //