Array 1 175956-174548 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNZO01000006.1 Photobacterium lutimaris strain CECT 7642 Ga0244627_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175955 28 100.0 32 ............................ TGTTATCTATCAAATTAAGGCTTTTTGCCTCG 175895 28 100.0 32 ............................ AACGCCGCTTCAAGCTGGCGACGACGCTGTTC 175835 28 100.0 32 ............................ AACATGAAATGAAAATCCCCGTAGACATTAAC 175775 28 100.0 32 ............................ TGATAGAAAAGAAATGTTTTGGCTGCTATGTC 175715 28 100.0 32 ............................ CAGCAGGCGGTCAAAAGTTTATATATTCAAAT 175655 28 100.0 32 ............................ AATGATTTCGCCAGCTAAATAAACGTCATGGT 175595 28 100.0 32 ............................ ACTAATGTTAGCGGTCAAACGTCAATTAACGG 175535 28 100.0 32 ............................ TCCACTTGCTTGCAAAGGTGCGCTACTGGTTA 175475 28 100.0 32 ............................ GTAAGGGTTTACGGTGTATACTAATTACACAC 175415 28 100.0 32 ............................ TCCAGCTCGGCATAATGACCCGCCATATCGCT 175355 28 100.0 33 ............................ ATGGCGCTACACGAGGTGATGGAGCTGGCCAAT 175294 28 100.0 32 ............................ TCGATCGAGACAATGGCGAACCAGCATTGAGG 175234 28 100.0 32 ............................ AATGTCTTTCTGTGACATTGGAATAACATTAT 175174 28 100.0 32 ............................ TCTTCTAAGCGGTCTATCTCAGCACGGGCCGC 175114 28 100.0 32 ............................ TGATTAAACTTTGCTAGCTCCATAAGCGAGCT 175054 28 100.0 32 ............................ CAGCGAAATTAAACTAACTATCGACCGTTTCC 174994 28 100.0 32 ............................ TCAGAGCAAGCCCCATCCCTACAAGTTATCGA 174934 28 100.0 32 ............................ TTCAACATATTTCCCACTCCTGCGCTTAACGT 174874 28 100.0 32 ............................ CAAGACTTGGTTAGCGTCGAGGGAAAGGTAGG 174814 28 100.0 32 ............................ ACATATCAATTAGATTATTCATTGTTCCCTCA 174754 28 100.0 32 ............................ ATGCAACACCATGCTTAAAGTGGCCGTATTCT 174694 28 100.0 32 ............................ ACCCGATTTGCTCTGTTCTAATTTCACTTTTT 174634 28 100.0 32 ............................ ATCGAGAACAGGGCATAACTGGATAATGCTTC 174574 27 96.4 0 ......................-..... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 CTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCAACTAATGGCATTACCATGGCTAAAAGGACTACGCGATTATATCAAGGTGAGTGCAGTACAAAAAGTGCCTGCCGACATCAAGGGATACCGAAGCATTTATCGTGTGCAAAAAAAATCGGTCAATAATCGCCGTAAGCGCTCGATTACCAAAGGCTGGTTGACGGAAGAGGAGGCGCTTCATTGTATTCCTGATGAAGGGCAACAGGAACTAAAACTACCCTTTCTGCAATTTAAGAGCTTATCTAGCCGCCAAAATATGCGGGTTTATGTGGCGTTAGGCGAGCTACTTTCTGAACCAAAGACGGGGCCAATAAACAGCTACGGTTTAAGTCGAGTAACAACTGTACCTTGGTTCTAATCTACTAAACCCTTTTTTTTACAACACCCATAAGTCACTGATTTTAAAATTGGCTTAAGATGAAGAAAAAAAAGGGTTTGCTCGCTGATTTCCTTATAAGCTCTTTAAAAATAGAATGTTAAACAGTATTATCTCCA # Right flank : AAACCTGTTTCAGCTCAATCTCCAATTCATACTTCCCCAGAGAGGCCTGCAACAAAGTACAAAGCAGAGAAAATGCTTCCAATGATCAAGGATACGTTACAACACCAATTGCGTGAATTGACCACATTATCACCCTATCGTCATATTCATCATAATTTGCTCAATGAGTTTCGCCTCCTGATCGAGAACAGCCCAGTAGATTCAAACGTTGCTTTATTTTGTAATGGAGGCTGGGGTCTGTAATTAATAGCCATTCAGTTGGATGAATTGATGGAGGGAAGGTGATTGAGGTCGCCCTTTTGACTCTGAAAGGCGCTGAGGGCTTCCGCCTGAAATACGGCCTAGACGGGATCTAGAGTATCATAAATGATGCTCTGGATGAGCTTGACTTGTATGTAGGCAAAGATCACTCTCCCTTGTACAGCCTGGGCATTGTTCTATCAAAAAATCTCCCGAAGGAACTATATGTTGTTTTATCTGAATAGCCACAACCAAACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 192438-194026 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNZO01000006.1 Photobacterium lutimaris strain CECT 7642 Ga0244627_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 192438 29 100.0 31 ............................. CATCCAGGCCGGATACCGCGAGCATCTTGTC 192498 29 96.6 31 ............................C TAGTTGCGCCATTACTTTAATCACTAACAAT 192558 29 96.6 31 ............................T TATTGCCAAAATAATTCAGGGGGCAGCAGAA 192618 29 100.0 31 ............................. AATAGTGAAATTAGGAAAACCACTAGAGCGC 192678 29 96.6 31 ............................G TACATTCTCGCTAAGGCTAAACGGATTCTAC 192738 29 100.0 31 ............................. GCTCCGACCGCCACCACGAAATTCTAGTTGA 192798 29 96.6 31 ............................T AGTACCGGAAGCAAATAACATTGTAGAACTT 192858 29 96.6 31 ............................G CGAGATGTACCGCAAGGCGCTGAAAATCTTC 192918 29 100.0 31 ............................. AGACACGGCCAATAGCAATGTGGCTGGTCTT 192978 29 96.6 31 ............................T TTTGTAAAGAGACTAAAGCTGTAGCGTTGAA 193038 29 100.0 31 ............................. GTTTCCTGATAGTAGCGCTCAAAAGAATCAG 193098 29 96.6 31 ............................G CGCTCAAACTCGGCAAACACGGCCAGCAGCT 193158 29 100.0 31 ............................. TGAGTAACGAGTTCTACCAGCTGCCTACTCA 193218 29 96.6 31 ............................C TGGTTCGAGTTTATCAATAACCCTAACGAAC 193278 29 100.0 31 ............................. GCCTCAGCTTTTCGGAATAATTCATTAATCT 193338 29 96.6 31 ............................T CGCATCGAGGACTGTCACCGGACACGGCTTT 193398 29 96.6 31 ............................G CCGATAATTTCACCGCCACTTTCTAAGATAC 193458 29 96.6 31 ............................T CCATATAGATAGTGTCATTATCCCCGTTCCC 193518 29 100.0 31 ............................. GCGACACCGCCTACAGTTAAAGCCAAACCAT 193578 29 100.0 31 ............................. TAGCGGAATTAATCGCGCCGTGGTCTGTAGT 193638 29 100.0 31 ............................. AGGAGCAGGGCGAGGAAGAGAAAGCCGAGGC 193698 29 96.6 31 ............................C AAGGCAACAAGGCTTATGAGGCTGGCTACAT 193758 29 100.0 31 ............................. CGGGTGCGAAGGTGGACGTAATGTTCCTCCT 193818 29 100.0 31 ............................. ACCCGCGTCGATAACATAATGTAAATGCATA 193878 29 96.6 31 ............................T GTTGCTCGGTTACTTCGGGCGTGTCGAAAGT 193938 29 96.6 31 ............................T CGCGAGCAAGATTGAAGATGATTTGCCGATC 193998 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =============================== ================== 27 29 98.1 31 GTTCACCGCTACATAAGCGGCTTAGAAAA # Left flank : TTCGGGTGTTCGGGATTGACCGAGTTTTGATGGATATGCTGCTAACTCAGATGCAGCATCATTTCTTTTTTCGAGACTACACGGATGTGAGTCCGATTAATACCGTGCCCGAAGACTTTAAAGGCCCCTATGTCAGTTATGAACGTTATCGAGTACCTAACCTACGGAGTAACGAGGGCAAGCCCCACAGGCGAGAGAAACGACTCTTAAAGGCAAAGCAGTTACCTCACTTAAAGGTGACTAGTAATGGCAACAAGAAAACTTTTTTGATCCCAATTTTGATGATAGAAGTGGACGGTAAAACGCCTTTCACACCAAATGGGTATGGTCTGGGAAGTAGCGCGAATAAAATTGCGTTGCCCTATGTTTAACCCTTTTTTTTAGCTCACATGTAAGTGATTGATTGTTAAAGTGTGAATTAAAGCTCGATAAAAAAGGGTTTTTTCGATGTTATTGGTGTAAGTGTATGTCTTAATATACTTTTTATCATTTTGGTTTCA # Right flank : TGCGCACCACGTTTTTCTCGGGGATTGCCTCGGTTCACCGCTACAATGACATAGCAACTTACAGGTAGGGGAATGATCATAGTATGTCTCTATGTCTCTATGTCTCTATGTCGAATTATTGATAAATTGGAAACACTAGGGAAGATCACGGGCATCGTCTTCAAGACTGGCTTCGAAATGCGATAGGGCATGTTCTAGCTCTTCCGTTAATAATTGTACTTCTTCATAGTTTCCCATTTTAATTGCACTACGTAACTTATCCCTACATTGTATCAGCTTCTCTCTTGCCGACTGTTTGGCAAAAAGGCTTCGTAGACTGTCCGCTTGATCCATAAATCAACCTCATATAAACCACATCCTAAGATCAGTATCTCTGCGGATTTTTCTATAATGCTATGTGTGAGTGAGCTATTGTGCTCCTATGCAAAAGATATCATAGCGATATAAAGCTGTACCAAACATGATGTGATTGGTTTCACAAATAAACGATTCAAAATGCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTACATAAGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //