Array 1 1704202-1704413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBHD010000001.1 Actinosynnema pretiosum subsp. auranticum strain DSM 44131 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1704202 29 100.0 32 ............................. GGGCACCCGCGTGCGGGGAAGCGTCGGTTCAA 1704263 29 96.6 32 ............................C GTCGCAGCGGCCTCGATCAGGTCCACGACCTG 1704324 29 100.0 32 ............................. TACTTGTCCCCCAAACCACGCCCGACGTGCAG 1704385 29 93.1 0 .......................A....C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCTTCCCCGCACATGCGGGGGTGGTCCG # Left flank : CACCGGGAGACGATGGCGGGCGAGGACGACCCGATCCCGAGCACGAACCGCCCGCCGGAGACCTCGGCGAGCGTGGCGGCCGACATGGCGAGCAGCGCCGGGCCGCGGGTGTAGACGGGGGCGATGGCGGTGCCGAGGCGGGCGGTGGGCGACCACTGGGCGGCGAGGGCGAGCGGGGTGAACGCGTCGGCGCCGGAGGTCTCGGCGGACCAGATGTCGGTGTAGCCGAGGGCGGTGAGCTCGGAGACGAGGGGTTGGTGGTCGAGGATCGGGACACCGGTCAACGGCAGCGTGATACCCCAACGACCCACGGTGGCCTCCCAGAGCTCCAGGTGAGGGCACCGTACCGCAGGGTACCGACTGGTCGGTATGCCGAATGGGGGAATGGGAGGGGTGGCGAGGGGCGGCTTGTGGCGGGCAGGACCGAGCGCTGGATCCGAGACTCCGCTGAACCGAATGAAAACGGTTCCTTGGACGGATAAACTCGCTGGCCAACAAGC # Right flank : CATCCATCCAGCCGTAACCCGCGCACAGGCCCGCCGCTGGACAGCTCCCCCACCCGACGTGTTTAGCGCCCCCGATCAGGGGCACCCAAGAGGCGCGCAGGCCCGCCAGGAGTCCGACCCGACAACCTCAGAGCGCGATCCCGCGTTGCGCCAGCCACCCGACCGGGTCGATCTTCTGGCCGCCGTTGAGCCACACCTCGAAGTGCAGGTGCGGCCCCGTCGACTGGCCCCGGTTGCCCATCGTGGCGATCTGCTGCCCCGCCGACACCCTGGTGCCCGCGTACGCCACGATCGTGTCCACGTGCCCGTACACGGTCACCGTGCCGTCGTCGTGCTGCACGCGCACCCACAGGCCGAAGCCGGACGCGGAGCCCGCCTCGATCACGGTGCCGTCCATCGCCGACAGGATCGGGGTGCCGATCGAGTTCGCGATGTCGATGCCGTAGTGCGTGGTTCCCCAGCGGGCGCCGAAGCCGGACGTGAACGAGCCCTGCGCGGGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACATGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 364534-363836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBHD010000010.1 Actinosynnema pretiosum subsp. auranticum strain DSM 44131 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 364533 29 96.6 32 ............................T GGGGTGGATCGGGTGTCCGGGGTCCTGTTCAA 364472 29 100.0 31 ............................. TGCAGGCCGAGCTGGTCCGCGTGGATGGTGG 364412 29 100.0 32 ............................. CGGATCGCGCTGATGGAGACCGGCGGGAGGCC 364351 29 96.6 32 ............................C TCGACGCCCGCCGCGTTCAGGTTCTTCACGCC 364290 29 100.0 32 ............................. GGCGGGTTGGACCTCGACGAGGCGATGACCGC 364229 29 96.6 32 ............................C CTGGTGCTCGTGATCACGGGCCCTCCTGGGCT 364168 29 93.1 32 ............T...............C TACGACCAGGTCACGCGTGGTGTGGACGGGTA 364107 29 93.1 32 ..........T.................C AGGGCGAACCCGCTGGCCGGGACCGCCAGATC 364046 29 100.0 32 ............................. TAGACCGCGACCCGCTTCAGGGCGCGCATGAA 363985 29 89.7 32 .....T......T.T.............. GCGAGTACGTCCGCGTCCGCGTCGACCCGGCC 363924 29 96.6 32 ........T.................... TAGCCGCGGTCGTTGCGGTAGATCGCGCTATC 363863 28 89.7 0 ..........T.....T....-....... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.0 32 GTCTTCCCCGCGCACGCGGGGGTGTTCCG # Left flank : AAGCCTCCGTCGGTCTTGACGGGTTGCTTCACACGAAGTGCCCTTGTGGCCGGGTAGTCGACTGCGGCCAGCCAGCGGGCAACCGCGACCTGACGGCGGGCGCCCGCCTCGTCTGCGTCGGCCTGGGCGATGCGGACGATGACTGGGGTGCGAAGCCTGTAGACGGCGTTCGAGCCGATCCGCAGCAACTCGGCGTCGGCGGGGTCGAGGTCGACCTGACGGCAGGCGGTGATCAGAACGCGCTCGGCCTCAGCGGAGGTCAGAGGGCTAGTACTCCTACTCGGCGTCACCGCTTGAACGCTACTCGTGGAGCGGAAAGGCTTCTGCCGGTCGCTCAACAGCGCGCGCGACGTGGTTGTGCTGACCATTGGCTACTCCTCCGCATGGGCTCATACTGGGGCCTCTGACGAGATCGAACCGAGGTCGTCGTGCTTGGCACGACACGTGCTCAACTGAATGAGAAACGTTGTTCTGGTTCAGGGAACCGCAGGTCAAGAAGT # Right flank : ATCAAAGGCATGTGCTCGTCACGTCCAGGGCGCGTCCAGGGGCAAGCTGTCGGCAGCAAAAGTGCTGGTCAGGGCCTGTAAAGGAAACGGACTGTAAATCCGTCGCGAAAGCTACAGAGGTTCGAATCCTCTACCCGCCACAACACGATGAAGACCCCCGTGACCAGCTAGAACAGGTCACGGGGGTCTTCTCTTTCCACGGGGTGCTGCCGCTCGTCCGCGGTTATCCGGGCTCAGGGGTGGAGCGTCGGAGTCGAAGCGCTCCTCGGCGGGGCGCGGGCGCCGGTGCGGCTCTGCTCGGGGCGTGTTCCCCTCGAAGGTGTGGCCGACCAGGCGCGTGTGACTCACCTCATGCGCGACGCCTGCGCCCGGTCGGCCACCGGTCGAGGAGCGCCACTGCTGTGACTGCGACAAATCCCCCTCTTCCGAGTGGAAAGCTCCGCTGTTCCGCGAATGCTCCATGGTCGGTTTGGCGCTGTGGATATTCCGAAACAGTCACT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //