Array 1 376-869 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYF01000225.1 Bacillus thuringiensis strain AFS005140 AFS005140_120_D3_Contig225_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 376 32 100.0 33 ................................ ATAACTTCAGCAACTCCTTACCAAAGCTTACAA 441 32 100.0 35 ................................ TTTCCTTAATTGTTTTACCCTATCCCCACGCATAA 508 32 100.0 33 ................................ TATATAGAACTATTCCGATGTCTATCAAAGATC 573 32 100.0 34 ................................ TTCATAGAACTTGAACTCTCAAAAAACTGGAGAA 639 32 100.0 34 ................................ ATAACTAGGAAGTAATATAAAGCAACCCCAACAC 705 32 100.0 34 ................................ TTTTAAAGCCAGCCTTCCAACCCCAAAAGTTAGG 771 32 100.0 35 ................................ AAACTGTTGAGGAGCATTTATTAGGGGTAAAAGAA 838 32 87.5 0 ...A......A..A.....T............ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.4 34 GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Left flank : GGAAGCTGAGTAGTTACGAATAAACTTGATAAGTGGATTGAAAGACAAGAGGTAGTTAATTTATTGTAAATTATGACTTAATATATATAAAGGCTATTGTGGAACTATACACTTTTGTTTATCAGTTAGGTAATAGCTATAAAAATAAGGTCGCACATATTGATGTAAAAGAATAAATTGATTAAGAAAATCCTTTAATTTTTTAGGTGCGAATGTATAGTAAACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATAAAATAAAAATATTTGTATACTTTTGAATAGAATTAACGTATTTGTGTGTAATTTTGAACGCAAATCGGAG # Right flank : TAGCACCCTTACTCAATTGAGTCCAAAAAGCACTGTCGCACTTCTAGTAAGTGCGACTAACATCACAAGATTGAGGAAGAAGGTTTTTTTAAGTAATGCTTTAGCTTCAAAATAGTCTTCAGCTTATTAGATACTCAACTGGAAGTATCTATATCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCTCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCGGGCATGCTCCATGATTTAGGTAAATATACCAATGAGTTTAGAGAGTACATATTGGAAGCAGTAAATAACCCTAATTCTTCATCTAAAAGAGGGAGTGTTGATCATTCAACTGCAGGTGGAAAATTATTATATCAATTATTCCATACAGAAAATATCATTCCTTAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9313-10479 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYF01000225.1 Bacillus thuringiensis strain AFS005140 AFS005140_120_D3_Contig225_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================================================================ ================== 9313 32 100.0 33 ................................ ACTTCTAAAAACCTGTGTCAATCGAACTGTATT 9378 32 100.0 35 ................................ AATGAAGTAAACGTTATAAACGGAAATAACAATAA 9445 32 100.0 35 ................................ AGGTGTATGTGCAGCAGTATTTGGTACAACTTTTT 9512 32 100.0 34 ................................ ATTGTATTTGGAGCGGTTAGTTGCTCGAATGGCA 9578 32 100.0 34 ................................ TCAACAATTGTCTGATAACTGCACGACTGAATTT 9644 32 100.0 34 ................................ TTACAAAACGAATCTATCATTTGCTACAAGAAAA 9710 32 100.0 34 ................................ CAAACAGAAGCATAACAACAAATAAAAAACTAAA 9776 32 93.8 35 T..................A............ TGATTATAGCAAAAAAAGGGGACAGAATATAAGAA 9843 32 81.2 34 .C..T......AG......T.....A...... ATTGCTCATTCATCAAAAGTTTTCAAAATTACTT 9909 31 87.5 32 T...-................A.A........ CCATAGTGATCATAGTTGTGGGTTGTGAATTT 9972 32 87.5 35 ..G.........T.G......A.......... TCTTTGCAGGTTTGGGAAAAAGGAGAAGTATTAAT A,A,T [9974,9980,9984] 10042 32 81.2 34 .........T.CGA.....T......C..... ATATAAATATTTCATCCATACCGGATTATCTTCA 10108 32 71.9 176 A.TA..T.C.....T.....AA.....A.... CTTAGTAGGTGAGAACGTATAGCACACATGAAATGTCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAAATTTATGATTTTCTATACAAATTTTTTTATCAAATAAAGAAATTGTATATTTTTGAACAGAATTAACGTAATTTTGTATGATTTTGAACAAAAATCGGT 10316 32 87.5 33 ......T..T.C..G................. CACTTATCTTTTTAAATTCTCCTTATAATATTT 10381 32 93.8 35 ................T......A........ CGCTAGTGCTAAACGTCTAAAGGAATTGTATGGGC 10448 32 81.2 0 ...A.......AG......TT..........G | ========== ====== ====== ====== ================================ ================================================================================================================================================================================ ================== 16 32 91.6 44 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTGTTGGCGGTGCAGGACAAAAAAGACTGCGGAAAGTTTCAAAAGCATGTCAAAATTATGGTCAACGAGTCCAAAACTCAGTGTTTGAATGTGTTGTTGATGCAGCTCAACTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGACGAAGATAAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTGTAAAAGAATCAATAGATTTAGAACGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTTGTACATTCGCACCTGAATTTTCATAATTTATGAGTAAAGTTTATGATTTTCTATGCAAGTTTCTTTATCTAATAAAAAAACTTGCATATTTTTGAACAGAATTAACGTATTTGTGTAGGATTTTGAACACAAATCGGA # Right flank : GTGGTAAGACACTTGATAGTATTTTATTAAGCCTTAACGCATTACCCAAATACCTTTTGACTAACGTCCTTCACAATCTTGAGGAAGAAGGATTCTTTTGGTAATGCGTTAACTTTAATTAAAACTTCTTGAAATATATAACGATATTATATAATATATAGGTATATTGTTAGTTTAATTGATTCCGTTTATTCCCACACCTTTTTGTGTTGTGGTTGAGTTGTAGAAGCAAGTTGCGTCTTGTTTCAATTGTGAAAGGGCTTCTTTGAGCCGATTAGTGTATATAGCTTATTTTGCTATGCACATTATTAATCGACTTGAAGAAGCCCTTTTTGTGTTGTTTTCAAGTTTGTAGGCAGGGTTATTTATGATTCATAACATAACAAAGTAGATAGTAGAGGAGATAGTAAAATGAAAAAAGATTGTAGACACTTAAGACTAGTACCAACAGTAGAGGAACATAAAACACGAATGGAAAAAAATCAGAAGCCAAATGCTGC # Questionable array : NO Score: 7.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.58, 5:0, 6:0.25, 7:-0.90, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 539-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTYF01000256.1 Bacillus thuringiensis strain AFS005140 AFS005140_120_D3_Contig256_140618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 538 30 100.0 35 .............................. GGGACACTTTTCCATAATTCCAATATTCCATGAAA 473 30 100.0 35 .............................. AATGAGGTCAAACGGTGTCATTCACGGACATTTTC 408 30 100.0 36 .............................. TCATGAGTTCGATAAACTTTTTAGCTCCGTCTCGGA 342 30 86.7 36 .G.G..T.....................G. ATGTATAAAATCTTTGCTCCAAAGAATGTTGACCAT 276 30 96.7 35 ..........G................... TTTAGCATGGACGGACTATATTTGTTTTTTAATGT 211 29 83.3 0 .....-...C.TT...T............. | A [198] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 94.4 36 GTTTAACACTAACATAAGATGTATTTAAAT # Left flank : AGTCAACGATGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCTATGTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCGAAAAACATTTCCACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTGCATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGATAATTGAGTCCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCAAATGTAAATAAACATTGATGCGTGGGCATTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACACAATACATCTATTTGCTGGTAAAATAATGTTTAATATTCATCTTATCAGGTTTTTTCCATATTTGTTAAAGTATCTATCTGTATTTCATCGGG # Right flank : TGTTACGGTTACTAATTGTTCAGCACTCAAACGATAAGAAAGTGAATTTTATCAATACGAATTTTTTCTTTTACATATTAAAATGGAAGGCCCATTTCAATGTATACTGAACCCTTCACAAATCGTGAAGGGATTTTTTTATTCAATAAACGAGTTTTACAAAAGATACAAAATGTTAAACT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //