Array 1 16850-17058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXH010000002.1 Streptomonospora sp. NEAU-YY374 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 16850 27 100.0 34 ........................... TACGGGGTCGGCGCCCTGCGCATCCGCTGGGGGT 16911 27 100.0 34 ........................... ACATCGCGGTAGTCCGCCCACCATCCTCGGTAGC 16972 27 96.3 33 ......................A.... ACGACGGGCGGATCGTGCGGGAACCGCATGATT 17032 27 85.2 0 ..........C.A............TT | ========== ====== ====== ====== =========================== ================================== ================== 4 27 95.4 34 GCGCCCCGCAGGTGCGGGGATGGCCCG # Left flank : CGAGCTCGCGGGCGGCGCCGCGCACGCGCGGCGGGGAGACGGAGACCAGCAGGTCGTGCACGGTGGAGTCGGGCGCAAGGGGTGCGGTGACGCCGTCGGGGTCCTCCTCGTCCCCGGCGGCGGAACCGGAGTGGGACCCGATGAACTGCCGCATCACCCCGAGCCGCCCGCTGCGGGTGACGGCCCCCTCGGAGGGGTCGATGTCGCCGGCGACGATCCGCAGGAGCGTCGTCTTGCCACTGCCGTTGGCCCCGACGAGGACCGCCTTCATCCCGTCCCCGACACGGAAGGACACGTCGTCGAGCAGGAGGCGGCCATCGGGCAGGTGGTAGCCGACACCGGCGACGTCGATATGGCCCATGTGCCGCACTATGCCGAGGGGCGGGGAGGGCTGTCGACCGGTTTTCCACAAGGGTGGGACTAGGGTGGTGTCGTCTCGACGCTATCCGGCAATATTGGAACGGTATTCGGCCGTTCCGTTATCGCAGGTCAATAAGTGT # Right flank : TTAACCCTTCCTTTCCGGCCTGCGGGTCAGCACCGCCACTCCCAACGCCGCCAGGGCCAGTCCTCCCCCGAGGTACATGGCTCCCGGCAGGCTGACCGTGTTCACCACGGCCCCGCCGACCAAAGCCCCTCCCCCGATGGCGGCGTTGAAGACGCCCACGAACAGCCCCGACGCCGCCTCCCGGTCCTTTCCGGCCGCTGCCGCGATCCAGGCCGTCGTGCTGACCGACACCCCGCCGTACGCCAGGCCCCACACCACCATCACCGCCGCCGCGCCGACGCCCGTCGCACCGAGGAACGGCACCAGCGGCATCACCGCCGCCAGCAGCACGCCGATGACCGCCAGCGCCCGGCGCGGGTTCGGCCCGGCCACCGCGCCCGCCGTGAAGTTGCCGGCCACGCCCGCCACCCCGTACACCAGCAGCAGCGTGCCGATCAGGGCCGCGCCCGCGCCCAGGGTGTCCTCCAGGACCGGCCGGACGTAGGTGTAGGCGGCGAAGT # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCCCCGCAGGTGCGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 55725-55023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXH010000023.1 Streptomonospora sp. NEAU-YY374 Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55724 29 100.0 33 ............................. CGGCCCCGGACGGACTCTCAGAAGCACTCTCGG 55662 29 96.6 33 ............................A GCGGGTGGACGCCCTCGGCGCCGAACGCGCCCG 55600 29 100.0 32 ............................. CGGGAGATGTGGGTCCTCAAGACCCGGGTGGA 55539 29 100.0 32 ............................. CGCCCTCCGGCACCCGCCGGAGGGCGCTTTTT 55478 29 96.6 32 ............................C CGGCTGGACATGCTCCTCAAGGCCGCCTTCGC 55417 29 100.0 32 ............................. CGGGAGCCTTCACGCCCGCCTCACTGCGTGCT 55356 29 96.6 32 ............................C ATCAGCACCATGGCGACCGCCACCAGGCCCAG 55295 29 96.6 32 ............................C GCGCACCACTGATCGCCAAGTCCGCAGTCGCC 55234 29 96.6 32 ............................C CGGGTGATGTCGTCGAGGTTGTAGGTCCGCAG 55173 29 100.0 32 ............................. TCCGCGATCGGCCGGGACATGCGCGGCGGCCT 55112 29 96.6 32 ............................C ACGGGATTGCCGTCGTGCGTGAACTTTTGCTC 55051 29 89.7 0 .........................GTT. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCAAGCGCGGGGATGGCCCG # Left flank : CAGCGCGGTGTTCAAGGACGGCAAGCGCCTGGTGCTGCTGGACCCGCGCGGCGGGGAACTGGCGAGCGGCGTGGTCGACCTCAAGCCCCACCGCCTGGCACAGGCGTTCCGCGCCCACGGCTACCCCTGGCGGGGCGACGGCGATCCCCACGCGGGGGATTTCCGCCGCTGGGTCCCGGGCCTGCCGGAACTACCGGCGGGCGCCCACGCCTTGCTCGCGGCGCGCGCCAAGGCCCTGGAGAAGGACCAGTCATCGGACGCGGAGGACCTGCGCGAAGAACTCAGCACCCTGGGCGTGGTCGTGCGCGACGACCGCAACCGCCAGTACTTCCGCCGCGTCCCCGACGCGAGTGAGGAGTAGGCCGGGCGGACGTCGTTGGCCCGAGGTACGGTGACGAGGACGGCGGAGAAGAGGACAGGATTTGGCCGCCAATGCCCCAAACTTCGACGGATTCAGTCTCAGATCGATAACGCCCCCGCATTCCCCCAGGTCCCGAAGG # Right flank : CCCCTGGATCCCGCACCGACCGCGCGGGGACTCGCTACGCGTCCAAGTACGTCAGCACTGCACGCACCCTGCGGTGACCCGAGTCTCCCGGGTCCAAGTCCAGCTTGGCGAAGATGTTGCCGATGTGCTTGTGCACCGCCCGCTCCGTTACCACCAGCTTTTCGGCGATCTCGGCGTTGCTCAGCCCCTGCGCCATATGTTCCAGGACCTCGCGCTCGCGGGCCGTCAGCCTTGTCAGGGGGCTGTCGCGCCGCACGAGCAGCTGTCCGATCACGTCCGGGTCGATCGCCGTGCCTCCGGCCGCCACCCGCTTCAGCGCGTCGATGAAGTCCCCGACCCGGCTCACCCGGTCCTTCAGCAGGTAGCCCACCCCGCCCCGGCCGTCCGACAGCAGTTCCCGCGCGTAGACCTGCTCCACGTACTGCGAGAACACCAGCACCGGCAGCCCCGGCACCAGCCGCCGGGCCGCCAGGGCCGCCTGCACGCCCTCGTCGCGGAAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36156-36377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRXH010000012.1 Streptomonospora sp. NEAU-YY374 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 36156 30 90.0 34 .....GG.....T................. CCGTGACCGCCGACAAGATCCGCGCAGGGTCGAT 36220 30 100.0 34 .............................. TGCTTGCGGTGGGTGAACAACTCCTGGGCCTCAT 36284 30 100.0 34 .............................. CGGGTGCGGTGCGCCCGCCCGGTTCCCCGCACCG 36348 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================== ================== 4 30 97.5 34 GTTGCAATCCCTCCAGGGATGATCAGCGAC # Left flank : CACTCCGCAGGAGCGCGCCGCCGCCGTCGCAGCAGCACTACGCGACGGAGCCACCAACGCCCAGATCGAGCAACGATACGGCCTGGGGCCGGTGGCCGTTGCCAACACGCTCAAACACCACGGGCACCCCACGCGCTGGCGACTGCGCAGCGCGGCCATCGCCGACCGCCTCCGGGCCGGCGACCCGGAGGAAGCCGTCGCGGCAGACTTCCCCGACGTCTCCCGCGTCCGCTTCCAACAGGCCCGCAACCGCGTCCGCGCAGAAGCCACCCAACTCCAGCAGCACAACATGGACGTCCGCAGCCCCGCCGCCCTCCGTCTTCACGCACAACCGCCATCGGAAACCTTCGAACAAGTCCAGGAGCCACTGTGGACCTGACGCAACTCCGGAGGCGTCTTGGATTTACCTCACCGCGCCTGACACGCCACCGACGTCCACATGGAGCGCCACGATGATCAAGGACACGGACGCGGGACCTGTAGCGGGCGACCGCTCTGCA # Right flank : CCCGAGGGTAAAACCGCAGGTCAATAGACGCGTGGACAACTACGGAAAGCCTTCGATTGCAGCGTTCCGCCAGTAGTGCAGCAGTGCACGTCAGGCCCGGTTCTACGCAACTCATATCACCGGGCCTTCGTGGGCCAGCCTTTGGCCGATGGTTTGCGTCTGCACGTCATGAGGCCCCTGTATGCGGTAGATGATCACACTGTCATATGAGGTGTCGATGAGGTCTTTGATCGAGTGGGTGAGCGAACGGTGCTGTGCGGCGGACAGTTCGCCCTGGAAGACGCTGCGCTGCACCCAGTGCAGGTAACGGCGGCAGAGTTTGAGGATTCTCGGGTTGCGCTCGGCCAGCGTGTCGTAGACGACGATATGGCTCGTCGTTGCGGCTGAGCCGCCACAGGAGGTCCAGCAGCCGGTCGGGGGGCCTGGTCGGGGTCGAACAGGGTGCGGGCGGCGGCGGTGGCGCCGTCGAGGACGACCTCGCCGGAGGAGCCGGTGCGGTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCTCCAGGGATGATCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //