Array 1 83334-81844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000036.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83333 29 93.1 32 T...........A................ CTCAGGCCCCATCGGGTGCGTGGGCTCGCCGA 83272 29 100.0 32 ............................. TAGACGGTGAGGAGCCCCAGCCCCACGGCCAG 83211 29 100.0 32 ............................. CCGTGGGAGGGCAGGTCACAAAGAAAGCGCTT 83150 29 100.0 32 ............................. ATGGAGGGCCCCTGCCGGGCCACATCCAGGGG 83089 29 100.0 32 ............................. GGGGGCGCTTTCCGTGGTCAGATGTGGCAGGA 83028 29 100.0 32 ............................. CGGGGGGTGTCGGTAGAGTGGCGCACCTTCAC 82967 29 100.0 31 ............................. GACCTCGCGGCCCAAACGGAGGGGGTCCTCC 82907 29 100.0 32 ............................. CGGAGCCACCAGGCCCGGAAGGCGAAAGACGG 82846 29 100.0 32 ............................. GCCCGCAGGCTGTACCAAAGGCACTGTGCGAA 82785 29 100.0 32 ............................. CGGGAGGCGGCCCGCTACATTTACGCGGCCTC 82724 29 100.0 32 ............................. AGGAGGGGGCCCGCATGGTAGAGGACTTCGCC 82663 29 100.0 31 ............................. CGCTATGAGGAGATGGCCCGGACCTACGCGG 82603 29 100.0 32 ............................. TGGATGACCTTCCTGGTGGCGGTCAAGGCCGC 82542 29 100.0 32 ............................. CGCTCATACACCGGGTCCCCCACCCCGGTGGC 82481 29 100.0 32 ............................. AGGCCACCATCCGCATAGGGCGGGACTTCCTC 82420 29 100.0 33 ............................. GAGTGCCTCTTCACCAAGCGGAGCTTCGGCGGC 82358 29 100.0 32 ............................. ACGGCGGCCTGGGCCTCGTCCCCCCCGCCGGG 82297 29 100.0 32 ............................. CGGACCGATACCGTTCTACTCAGGAATCAGGC 82236 29 100.0 32 ............................. GCGAAGCCCGTGGCCAAGGCGGTGGACGCCAC 82175 29 100.0 32 ............................. GAGGACGGGACTCCTGGGGATACCTACTACGT 82114 29 100.0 32 ............................. ATGCGGGGGGAGGTGGTGAGGGCCGGCCTCCT 82053 29 100.0 31 ............................. GCCCCGGCCCCCAGGGCGGCCAGAAGGCCAA 81993 29 100.0 31 ............................. CCCGTGGCCCGCACGCCCGGCCAGGTTGAGC 81933 29 93.1 32 .............AC.............. AACGACGCCTCCGAGGTGTACGACTGGCTGAA 81872 29 93.1 0 .............AC.............. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : TCCTTCCAGTCCTCCGCGTAGAGCCTCCGGGTGCGTTCCGGCTCCCGCTCCAAAAGGGCCAGGGCCACCGCCGCTGTGTCCAGCATGTGGGCCAGGAGGGACCGGTAGGGGTCGCTCTTGGCCCAGAGGGTCAGGGCGGCCTTCTCCACCATGTCCCCCTCTTACCCCCTTTCCCCGTCAGGTGCTGACGCTTTGGCCAAAACCTGCCGGGCCTCCACGTGGGGCCTGAGCTTTAGGCGCTCCGCCAGGTCTACGAGCCTAAGGCTCTTTTCCTTAAGTCCCATTAAGGGGAGTATACCGCTTTGCCACCCCCCCTCTTTGGTAAAATGCACCCCAGGGCGGCACTCCGAGTCATCCCCTCTCGCCCTGGGCCGGTGTGTTCTGAGCCCACCCAAACCGCACCGGCAGGCACCTTGAAAGACTAGCCCCGTTCCCTTTCGGCGTTTCCTGCGGGAAGTAGCCCGGTGTTCCCTTCGGGAAGAAATTCGCGCTTTTTGGAC # Right flank : CTAGCGCTGGGAGGGCTTCCTGGGGTAGCGTCAACCTATCCCCTGGCGCAGAACAGGGAGGAGCTCGGGGCGCACCAGCTCCGGGGGCGGGGCCTTCCCCTCCCGCAGGAGGGCCCGCACCCGGGTCATGCTGATGGAAAGCCGCTTCTCCCGGTGGGCCTCGGGGCAGGTCCTCTCCGAGGCGATGCCGCCGCAAAGGGGGCAGTGGAAGACCGCCCCCACCTTCACGATCTCAATGCCCAAGGGGGGGAGGGCGTCAAAGATGCGGTGGGCGGCGTAGGGGTCGTAGAAGTCCCCCACCCCGGCGTGGTCCCGGCCCACCAGGAAGTGGGTGGCCCCGAAGTTCTTCCGCACCAGGGCGTGGAAGACGGCCTCCTTGGGCCCGGCGTAGCGCATGGGGGTGGCCAGGCCGAAGAGGGCCACCCGCTCCTGGGGCAAAAACCCTTCCAGAAGGGCCTGGTAGGCCTTCACGATGACTTCCGTGGGGAAGTCGTCCGCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91317-91589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000036.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91317 29 86.2 32 C...G..T....A................ TACCAGAACCTCATCAACCAGTACCTGAAGGA 91378 29 100.0 32 ............................. TCCATCACCAGGTAGAACCTGCTTCCCCCCGC 91439 29 93.1 32 ............A...............A CGGCTGTACTCGGGCTCCAGGGGCGGGCGGAA 91500 29 100.0 32 ............................. CCGTTCTCGTCGTGGGCCAGGTAGTAGCCGGG 91561 29 93.1 0 .............G..............C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : TGCGGCCGGGCCAGGTCCTCGCCTTCCGCCTCCGGGCCAACCCCGCCAAGCGGGCCCGGGAGACGGGGAAACGGGTGGCCCTGAAGACCCGGGAGGAGAAGCTGGCCTGGCTTTCCAGGCGGCTGGAGGAAGGGGGGTTTCTTCTACTCAAGGGGGAAATCCTCCAGGACGTCTTCCTGGAGGTGCCCAAGGCGGGGCACCGGGTCCAGGTCCAGGCCGTCCTGTTTGAGGGCCTCCTGGAGGTGAGGGAGCCGGAAAAGGCCCTAAAGACCCTGAGGCAAGGGGTCGGCCCCGGGAAGGCCCTGGGGCTCGGCCTCCTTTCGGTGAAACGCGCCTGAGGGTGACGGGTAGGGCCTTTCCCTCCGCCCCCACGCTTCCTGCCGGGGCCTTGATGGTATAGTGCGGGTGACGGTGCGCAACGCCGAGGCCGTGCGCAAGGCCGAAAAGCTCAGGCGCACGACCCAGGCAGCGCGCGGGGACCTTGACAAGGAAAACCCGGG # Right flank : CCCTTTTCTTGCGGCGTCACCCCGTATAATGGAGCTGTCCCCGTTTTGGGGAGAGAAGGGAGTCGCCCATGAAAAAGACAAGGCTCGCCCTTTTGGTTCTCGTCCCCCTGCTCCTTTTGGGGGCCTACGTCTGGGCCTCGCCCTACCTCTTCCTGCGCTCCCTCCAAAGCGCGGTGCTCGCGGGGGACCAGGCCCGCCTCGAGCGCCTGGTGGACTTCCCCCGGGTGCGCCAGGGGCTGAAGGCTGAGCTCCACGCCGGCCTCTTGAAGCAGGTTGGGGAAGAGGCCAACCCCTTTGCCGGCCTCGCCTACCTCTTCGCGGCGGGGCTTCTGGACGCCTTCGTGGATGCCCTCCTCACCCCCGAGGGGCTCGCCTCCCTGGGCACCGGCCAGGAGCCCGGACAAGCCCCCAAGGAGGCGGTACGGGACTGGCGGCTCGCCTACCAGGGCTTCCGCCTGGCCTACATCTACCCCAAGGACGACCCTAATAGCCGCCTCTAC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 136407-135841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000038.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 136406 36 100.0 38 .................................... TATTCTTGATCCTCCTTGCGGATCAAGTAGCGGTAGGA 136332 36 100.0 38 .................................... CCGAGGATGCTGAGGAGTTGAGCCACCGCCGGGTCGAA 136258 36 100.0 41 .................................... CCCACCCGGGCCACCACCTCGCGGCGGAACTCCAGGGCCTG 136181 36 100.0 39 .................................... ACGGTCCAGACTTCCTCAACCCTTGTAAACCAAGCCAGT 136106 36 100.0 40 .................................... TAGTCCAAAATCGCCTTGGGCCGGAAGCCTGCCCAAAGCG 136030 36 100.0 42 .................................... AACCTTTTCCCGCCTAGCATTCGCCCGGCATTCTGGACAAAT 135952 36 97.2 40 ......A............................. TACTTCTTCCTGCCGCCGAGGCCCTTCACCTCGTCCAGAG 135876 36 97.2 0 ......A............................. | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 99.3 40 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : CAGGATGCAAAGCTACCGCCCTCGGAAGTGAGGGCGGTAGCCTTTTGACCCCCAAAACTGACCCCCAAAGGATTTATCCCTGCCCCCCTCTAGGCTCCATCCCTCCTTCTGTAGCCCGCCGCCCAAGGGACAGGCCCCCCGCCCTCCTCTCCCCAGGTGCCACTTGACGCGACGGAAAAGGCAAATCTCGCACTTCAAAAAATAAAGCTTAGTCCAGCACGGCGCTTCTGCCCCAAGAGTAGACCAAGTCCACCGTTTCAGTGAAGTGCTATAATGGCCTTGTCCGGAGCTCCGGACGGGGACCTTGAAAGCCGGTTCTTCCCTTGGGGATGGGCAATATGCGTTTTCCCCTTCTCATCGCCCCTTCTTCCTGCGGCTTCCAGTCGCACAAAACCCCCGAAAACCGCCCTTATGCGCCGTGTATATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTACGGGCGCTGTCCTGGACGTGGTTTTTCTGGGGGTACC # Right flank : CCCCGGCCTCGAGCCGGGGGTTTTTCGTTTTTCGCCTCCCCCGGCCGGGAAGGGGGTCTATGCACCCGGGATTGGCGGCGTTCCCTGTATGCTTCTGTAAAGCCCCTTCGGGGGGAGGGCGGATATGGAAAGGCTTGGCGTGCACCAGATTCTTCCACTGGGCTCTGTGGTCCGCTTCCGGGACCGCAACTGGGTGCTTTTGGAGAGGGAGGAGGACCGCCTGGTCCTGAGGCCCCTGGCGGGAGGGGACGGGGCGGTTTTGGCCGTGCACCCCCTACTTTCGGAGCGCCTTTCCTTCTTTTTGCCCCAGGAGGCCCTGACCCTTTCCCAGTTTGAGCCGCCCAAACCGGAGCTCAGGGCCAAAAACCACCAGGACTTCGCCCTCTTCCAGCAGGCGGCCCGCCTCCTCCTGCGGGAGGGGGTGGCCCCTTTTCGCTCCCTGGGCAAGGTGAGCGTGCGCCCCCGGCCCTACCAGCTCGTCCCCCTCCTCATGGCCCTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 58590-58004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================= ================== 58589 36 97.2 38 ......A............................. CTCCTCCTTTCCTCCCCCCTGCGGGCCTTTGGCCCTTC 58515 36 100.0 43 .................................... ATGGTCCCCTCGGCCCCCCACTCTCCAAGGAGGGGGTCGATGT 58436 36 100.0 41 .................................... AAGGCGGCCCGCATGTGCGGGGGGAAGTCCTTGCCGTCGAT 58359 36 100.0 42 .................................... TCGTCCCCAATGCGGATGTCAGGCAGGTCTTCCACGCCGAAG 58281 36 97.2 40 .....................C.............. AAGCCGGGGGGCAGCATGTTCAAGCTGAACGCGTTCGCCA 58205 36 86.1 129 .....................C..........GAGG AAAGCTTCGCGAAGTGATGAAGCGGTGAAGTGGTGAAGCGGTGAGGCGAGGAAGTGGGGAAGCTGAATGCCGAATGCTAAAAGCTGAACGCTGGACGCTAAATGAACCGCTTTGGACGTTAGACGTTCG 58040 36 83.3 0 .CCT.C...............C............C. | G [58032] ========== ====== ====== ====== ==================================== ================================================================================================================================= ================== 7 36 94.8 56 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GCTTCAAGCCCGCGTACACGGGGCCGGGGTCGTTTCCCAGAAGCGAAACGTAGGTGACCATTCTCCCCCCTTTCTGGGGGTATTCTACCAGGACCCCTTGGGGGCTCCCGGTCTGCCGCAAACCGGGCGAAGGCGGCCCAAGGCGCGGGACACCAGGCGGCACTTGACACGACGGAAAAGGCAAATCTCGCGCTTCAAAAAATAAAGCTCAATCCAGCACGGCGCTTCTGCCCCAAGAGTAGACCAAGTCCACCGTTTCAGTGAAGTGCTATAATGGCCTTGTCCGGAGCTCCGGACGGGGACCTTGAAAGCCGGTTCTTCCCTTGGGGATGGGCAGTATGCGTTTTCTCCTTCTCATCGCCCCTTCTTCCTGCGGCTTCCGGTCGCACAAAACCCCCGAAAACCGCCCTTATACGCTGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTACGGGCGTTGTCCTGGACGTGGTTTTCCTGGGGTTACC # Right flank : CCTTGGCCCTGGTGAGGGCTGGGAGTCTGCCACCCCCGGCCTCGAGCCGGGGGTTTTCGTTTTTCACCCTCCCCCGGCTGGGAAGGGGGCCTCGAGGCGCGGTTCGTTCCTGGGGTGGGGGGTGGCTTCCAGACGGCCGCTAGCCGGTCAAGCGGCGGTTGCAACTGCCCCTAGGCGGCCCACCCAAAACCCAACCGGAGCGGTTCAAAATCCTTTGGGGGTCAACTTTGGGGGTCAAAAGGCCGACCGCCCTCACTTCCGAGGGCGGTAGCTTTGCGTCCTGGACTTGGCGGGCCCGGAGGGATTCGAACCCCCGACCTACCGCTTAGAAGGCGGCTGCTCTGTCCCCTGAGCTACGGGCCCCCAAAGGGAAGGGGGCGGCCTAGGCCGCCCCGGGCTTGGAGCGGGAGACGGGACTCGAACCCGCGACCCTCGGCTTGGAAGGCCGATGCTCTACCAACTGAGCTACTCCCGCGCATGGTCGGGGCGACTGGATTTGA # Questionable array : NO Score: 4.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-1.61, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 69772-69284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 69771 36 100.0 41 .................................... TCGCCCTAGCCTTATCCGGCCCGCACCGGTTTCTTGCCCAA 69694 36 100.0 38 .................................... TCCTTGAAATGCCACACAACGCACAAACTATACCCCTT 69620 36 100.0 41 .................................... CCGAGGGCGGCCGCAGTCAGGACGTTCAACATATTTTTTCT 69543 36 100.0 39 .................................... TTTGCCCCGTCGTAGCAGGGGTCGCACAATAGCAACCCC 69468 36 97.2 40 .......A............................ TCCAGGTAGTCCCTTATGAGCCGCTCCACGCTTTTCTCTG 69392 36 97.2 38 ......A............................. CCCAGTCTGCGGCAGTCTAAACCCCACTTGCATCTTTG 69318 35 88.9 0 ......A..........T..............-..G | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 97.6 40 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : AGGGAAGTGGCCTCCTTTCCCGCTCGGAAGGTGCGCCAGGTGGCCGTCTGGGGGAATGAAAGCCCTACGGGGAGCTTCTGGAGGTCCAGGCCCAGCGCCTGAAGGCGGCCCTGCTGGGGCGCGGGCCGTACACGCCCTTTTACCTTCGCGGCTGAGAGGGGACTTGACACGACGGGAAAGGCAAATCTCACGCTTCAAAAAATGAAGCTCAATCCAGGACGGCGCTTCTGGCCCAAGAATAGACCAAGTCCACCGTTTCAGTGAAGTGCTATAATGGCTTTGTCCGAAATCTCGGACGGGGACCTTGAAAGCCAGTTCTTCCCTTGGGGATGGGCACTATGCGCTTTCTCCTTCTCATCGCCCCTTCTTCCTGCGGCTTCCGGTCGCACAAAACCCCCGAAAACCGCCCTTATACGCCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGCGGGCGCTGTCCTGGACGTGGTTTTTCTGGGGGTACC # Right flank : GAAAGCTTCGCGAAGCGGTGAAGCGATGAAGCGGTGAGGCGGTGAAGCCAAACGCCCAACAAAACCCGGGACATTCGGCGTTCGGCGTTCGGCCTTATGGCGTTCGGCCCCCCGCGTAAAATGCCCCTATGGGCAAAAGGCTGTACGCTATCGCCTACGACATCCCGGACGATACCCGAAGGGTGAAGCTGGCCAACTTGTTAAAAAGCTACGGAGAGCGGGTTCAGCTCTCCGTGTTTGAGTGCTATTTGGACGAGGGGCTTCTCCGGGAGCTCGAGGCCAAGGCCAAGCGCCTATTGGACCTCTCTGAGGACGCCCTACGGGTCTACCCCGTTCAGGGGACGGTCCGGGTTTTGGGGGCAGGTCCCCTGGTGCGGGAGACGCCCTTCGCCGTGGTGTGAGGCTCGCCCGCCGGCGTTGAGCGTTCGGCCTAAATCAGCCCTTCCAGACGCCCAGGGCCTCGAGCGCTTTCCGCACCGCCTCGTCCTTCTTCGCCCACC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 72427-72940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 72427 35 94.4 40 C..-................................ CTGATTGCGTGGCAAAAAGAGCGGGTGGCCCGTCTGGAGA 72502 36 91.7 43 ..............G..A..........G....... TCATCGGGGACGATGACCAGGCTATCTGCGGCTGGATGGGGGC 72581 36 97.2 41 .............................T...... AAGCGGGACTTTTTCCCTGAGGTCCCGGTGGCTGTGGCTGT 72658 36 91.7 40 .............GG..................G.. CCAAACTCCACCGAAAATACCAACAAATCCGTCAAATCCT 72734 36 100.0 49 .................................... TCACCGCAGTCGGCAAAGAAGTCCTGCAGGGAGCCCGACGGGATATGTC 72819 36 86.1 51 .CG...........G..........C......T... CTTTGGGGCTACATCAAGAGCGCGAACCTGCTGGAGCGGTTCGTATCTTTG 72906 35 77.8 0 ..G............T....G......C.CA.-..G | ========== ====== ====== ====== ==================================== =================================================== ================== 7 36 91.3 44 GTCGCAATCCCCTTACGGGGAAGCATCTCGTGCAAC # Left flank : GCTCTTCCAAAACCCCGAGGGGCCGGACCTGCCCCTGCGCTTCTATAGCCCCACCTTCTTCCGCCGCAAGGGGGTGCACTACCCCCTGCCCGAGCCCCGGCTGGTCCTGGAAAGCCTCCTGCGCCGCTGGGAGGCCTTCGCCCCCGTGAAGCCCCCCGAGGAGGTGCGGGAGGCCCTTTTGGAGCGCACCACCGTGCGCTGGATGGAGGGGCGGACCCTGAAGGCGAAAACGGAGGTGGAGGCGGCGGGCTTCGTGGGCCGGGTGGTCTACCACCTGCCCCGGAGCACCGAGGAGGAGCGGGCCTGGCTTTGGGCTCTGGGGCGCTTCGCCTTCTTCTCCGGGGTGGGGGCCAAGACCGGCCTCGGCCACGGGCGGGTGCGGGTTTTTGCGTGGGAAGGCTGAGGTCCCTTTAGGCCGAACGCCGAACGCCGAACGTCCAGGGTGCTTCGTTGGGCGTTTGGCGTTTAGCCTCATCGCTTCACCGCTTCGCGAAGCTTTC # Right flank : GGCCGAACGTCTAACGCCCAACGTCCAAAGTGAAGCGCTGCGCATCTCCAATGGAAGAACCGGCTTTCAAGGTCCCCGTCCGGAGCTCCGGACAAAGCCATTATAGCACGTTGGGATAACGGTAGACCGAGTCTAGTTTATGGCGGCGAAGGGCTTTTCCCATCAATACTTCGCTTTGGTCAAGTGAGAAACGGGCCTTCGCGCCGAAACAAGGCAAAAGGGCATAGTAACGCCGTGGGGGGAGTGTGCACACGTCACAGGGGGGCCTTTTTTGGGGTATAGTGTGGTCATTATGGAAACCGGGCTCCAAGTGGCCCTGGCCGCCCTTATCCACGACGTGGGCAAGCTCTTCTCCCGCGCTCGCTGGGGCGAGGGGGACTCGGAGGTCCCCGACCGCACCCACACCGCCTACACCGCCCTCTTCGTCCGGCGGCACGCTTCCCTCTTCCGCCGGGTGGGGTTGGACCCCGAGGCCCTGGCGCAGACGGCGAGCCGCCACC # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:-0.07, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCCTTACGGGGAAGCATCTCGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 81454-81792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 81454 36 100.0 42 .................................... TCATCGCTCGGGACAGCGGCATCTACACGCAGCACGGCTACC 81532 36 100.0 43 .................................... CCTCCTCGCGAGGGCGCTCCAGGAGCGCGTTGTAAATCTCCTG 81611 36 100.0 38 .................................... TAGAGAAGCCCCCCGGAGCCCAAAATGGCCCCTAGGGA 81685 36 100.0 36 .................................... CAGCACCTTGGACGCAATCACCCGGGGGCTCGGCGT 81757 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 99.4 40 GTCGCAATCCCCTTACGGGGAAGCATCTCATGCAAC # Left flank : CCTCGAGGCCGGCATGCATAAGGTCTGGAACCAGGTCCAAGAGCACCTGGGCTTGAAGGACGAGGAGGGGCAGGCTTAGGGTTGGAGCATCTACTACCCCGCCTGGCGGGCGACCCTCACACCACGGCGAAGGGCATCTCCCGCACCAGGGGACCCGCCCCCAAAACCCGGACCGCCCCCTGAACGGGGTAGACCCGTAGGGCGTCCTCCGAGAGGTTCAATAGGCGCTTGGCCTTGGCCTCGAGCTCCCGGAGAAGCCCTTCGTCCAAATAGCACTCAAACACGGAGAGCTGAACCCGCTCTCCGTAGCTTTTTAACAGGTTGGCCAGCTTCACCCTCCGGGTATCGTCCGGGATGTCGTAGGCGATAGCGTACAGCCTTTTGCCCATAGAGGCATTTTACGCGGGGGGCGAACGCCGAACGCCATAAGGCCAAACGCCCAACGCCGAACGTCCCAGGTTTTGTTGGGCGTTTGGCGTTTAGCGTTCAGCACACTTTCG # Right flank : CGGTAACCCCAGAGAAACCGCGTCCAGGACAGCACCCGCAGAGGGGGGGTTTGTGAGAAAGATGAAGCTTGGAATATACACACGGCGCATAAGGGCGGTTTTCGGGGGTTTTGCGCGACCAGAAGCCACAGGAAGAAGGGGCGATGAGAAGGAGAAAGCGCATATTGCCCATCCCCAAGGGAAGAACCGGCTTTCAAGGTCCCCGTCCGGAGCCCCGGACAAGGCCATTATAGCACTTCACTGAAACGGTGGACTTGGTCTACTCTTGGGGCAGAAGCGCCGTCCTGGATTGAGCTTTACTTTTTGAAGCGCGAGATTTGCCTTTTCCGTCGTGTCAAGTGGCACCTGGGGGGAGGGGGTAGGGGGCCTGTCCCTTGGGCGGCGAGCCCCAGGGGGAGGGGTAGGGCCTGGAGGAGGTCCTGCCCTCCCCTCGCCCGGGCCGGCGGGGGACTCGAGGCCCCGGGGTGGCTTCCCCTTACGGGGAATCACCGTCCACCCTG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCCTTACGGGGAAGCATCTCATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 84545-83024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 84544 30 100.0 38 .............................. GCTGCCCTATAAGAGAACCATCAGGAGAGCGGAAGTAT 84476 30 100.0 36 .............................. CTCTTCTCATTCCAGGCCAAGCCGTAGGAGCCGTCG 84410 30 100.0 37 .............................. GCCATCCTCACCTCCTAAAGCCATCCTACCGCTCGGA 84343 30 100.0 37 .............................. TCCTCGGCCCAGTTGTCCCCGTCGGAGAAGAGGAGAA 84276 30 100.0 38 .............................. GGTGGTTCTGGGTGCACCAGATGCACCACCCCCGTGCA 84208 30 100.0 40 .............................. CCGGGGCAGGGGGATCGTTACCCACCCTGCCTGGGAGCGG 84138 30 100.0 37 .............................. TAAAAATCCCGGGCCCGCCCCTCGTCCTCGCCCAGGT 84071 30 100.0 43 .............................. TTCGTGAGCGGCATCTCGGGGCGGTTTCCGGCCTTCATCCCGG 83998 30 100.0 37 .............................. GTATTCTCCCACCCCCGGACCAGGCCAAGATAACCCC 83931 30 100.0 37 .............................. TCGTCCGCGCCGAGGGCCCCGTCCACCCCGTAGGCGA 83864 30 100.0 36 .............................. TCGAGGAGGGCCTGCTCGATCTCATGCAGGGCCTCC 83798 30 100.0 40 .............................. GCGTCCTCCAGGACATAGTAGCGCCCGTCTCTTCCCAGGG 83728 30 100.0 34 .............................. TCCATTTCCTGTACCGCACCGATCCGCACCGACC 83664 30 100.0 37 .............................. GGGGATGCGTGCCCTTTATCCGCACCTACCGCACCGA 83597 30 100.0 35 .............................. CGCAACCGGCCGGTTGCCGCGGCCGGTTTTGCGCC 83532 30 100.0 39 .............................. CTCAGGCCGCATGGAAGGCCCTGCATCTGGACTTCGCCG 83463 30 100.0 40 .............................. ATGCGGCTGGAGGGCCCGCCCCCGCCTTCCGCTACAACGG 83393 30 100.0 38 .............................. CCCGGGCTGGAGCCACTTCCCCCGGATGTACACCCGGA 83325 30 100.0 36 .............................. ACCACCAGGGCTTTGAGGTGGCCCGCCGGATGCTGA 83259 30 100.0 40 .............................. TCCGTGCCCGCGTCAACCTCGGACTGGGTGGCGATGCGGG 83189 30 100.0 38 .............................. GGGGTCTTGGCCCTAGGGGTCGGGGCCTTGGCCTTGGA 83121 30 100.0 38 .............................. TGTCGTATAGTAAGGATGGAAACGGAGGCCCCACCCCG 83053 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 23 30 100.0 38 GTTTGCACCGTACCTATGAGGGTTTGAAAC # Left flank : CTACCGCCGCCACTCCCTGAACCTGGACGTGGCCGAGGTCTTCAAGCCGCCCCTGGTGGACCGGCTCCTCTTCCGCCTGGTCCGCCGGGGGCAGGTGAAGGCGGGCCACTTCCTGAGGGAGGGGGAAGGGGTGTTTCTCTCCGAGGCGGGCCGAAGGCTGGTGGTGGAGGAGTGGGAAAAGACCCTCCAGGCCACCTACCGGCACCCGAGCCTTCGCCGCTCCGTCTCGTACCGGACCACGCTTCGGCTCGAGCTCTACAAGCTGGAAAAGCACCTCATGGGTGAAACCCCCTACGCCCCCTACCGCATGCGATAGTTTGACCCAGTCCATTTTGCGCCAACCCCCAATCCCCCCCAAAACCCGGGGGGGTTGACGCAACACCCCCCACCCCGGCTATAATCCCTTCCAAAGCGGCCCTCCCCCCTCTGGGCCGTAGGGGATCTTGAAAACAAAGATGAAGGTTCCATGAGAGCCTCTCGTCCAGAACGAGACTTTGGCT # Right flank : GGGGTCCGGTACAGGGCTCAAAAGACCGACCGCCCTCGTAAGTGAGGGCGGTAGCCTTGCATCCTAGACTTGGCGGGCCCGGAGGGATTCCAACCCCAGGGTGTGCGGGTCCAGGGGCGGGGTCCTTGGCGGGGACCAGGCCCCGCTCGTGCTTCATCTGAAGCTCCCGCCCCTTCTTCAGGGCCTCCTCGGCGCTTCGGCCAAAGAGGCTCACCCGGCGGAGGGTTACCCCGTCCTCCCCCCGCACATAGAAGCGGTACTCCCACCGCCCATCCTTCCGCTTCCTGGGCTTTGAGCCCTTCCTGGGCATGGCTTACCACCTCCTCCCCTTTCCGCTCCGCCAAAGCCACCTGACCCGGCGGATGGCCCAGCGCCTCCCCACCCGCCCCCGGGCCAAGGCTTGGGCCAGGCGGAGCCAGGACCAAAACCGGCGGAGGTTCACGCCTCCTCCCGGCGGAGAAGACCTAGGGCCTCGAGGCCCACCAGGAGGGCCCGGCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 6 93278-93638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 93278 30 100.0 36 .............................. CCCCTTCTGGAAGCCTCGGACCAGAGTATTGTCCAA 93344 30 100.0 36 .............................. CGGAGAAGCCGGAGGAAAGCGGTAGCGGCGGGAGAG 93410 30 100.0 35 .............................. CTCCGGTAAGCGGGGGTCGCGGCCGTCAGGCCGCC 93475 30 100.0 37 .............................. ACCTTCCTTTTCCCTTTCCTCTTCTCCCCGTAGACGG 93542 30 100.0 37 .............................. GGCGGCCCGGGAGAGGACCCGCCGCTCCACCGCCTGA 93609 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GTTTGCACCGTACCTATGAGGGTTTGAAAC # Left flank : TACCGGGGCCGGGTGCTGGTGGTGGACGGGGTGGGGGTTGGGGTGGTGCAGGTCTAGGCCGTGTACGTGGTGATGGTCTACGACGTGGGGGTGGAGCGGGTGGCCCGGGTGCTCCAGGTGGGGCGGCGCTACCTCACCTGGGTGCAGAACTCGGTGCTGGAGGGGGAGATCTCCCCGGCCCAGCTGGCCCGCCTGAAGGCGGAGCTAAAGAGGGTCATAGAGCCCACGGACGCGGTGCGCTTTTACCTCTTCCCGAGCCGCGAGGCCCTGCGGGTGGAGACCCTGGGCTCCTCCAAGAACGAGCCCACCCAGTTCCTTTGACCCGGTCCATTTTGCGCCAACCCCCAATCCCCCCCAAAACCCGGGGGGGTTGACGCAACACCCCCCACCCCGGCTATAATCCCTCCCAAAGCGGCCCTCTCTTTTCTGGGCCGTAGGGGATCTTGAAAACAAAGATGAAACTTCCATGAGAGCCTCTCGTCCAGAACGAGGCTTTGGCT # Right flank : CGCTGTAGCATAGCACAGGTGACGGTATACCGTCAATAGTTTGCACCGTACCTCAGACTTGACCGCTATTCGTCCCTTGGTGTAGACAAGAGGACATGAAGCTCAAAGAGGCCTTGACCAAGATCCCCGACCCCCGCGCCCAAAACCGGCAGTACCCCCTCTGGGGACTCCTGGGCCTCATCCTGGTGGCCTTCCTTTGCCGCGTAGACTCCCTTCGCGGTGTCGCCCGCTTCGCCCGCGAAAACCCTGAGCTTCTCCCCCTCCTGGGCCTGCGTAAGCCCCCAGGCCACTACACCGTGACCACCATCCTGCACCGCCTGGACCCTCAGGACCTTCAGGAGGCTTTGCGCTCCGTCTTCCCGGAAGCCGATCTCGCAGCGGTCCTCGTCGCCGACGGGAAGGTCCTGAGGAACAGCCGCAAGGGGAACGCTCCCCAGGTCAAGCTGGTGGAGGTGCTCGCCCTTCACCTGCACACCACCCTGGCCCAGGCCCGGGCAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 7 95656-94831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPSL02000037.1 Thermus filiformis strain ATCC 43280 THFILI_v2_SCAFF037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 95655 30 100.0 35 .............................. CCGGACCGCAAGAAGAGGGACCTGGACAACCTCCT 95590 30 100.0 36 .............................. TCACCCCCTCCTCAACGCGTCCTCCGCCTCGAGGCG 95524 30 100.0 38 .............................. CGGAACCCGGCCATGAGCCTGGCCTACCTCCAGCCGGG 95456 30 100.0 37 .............................. TCCCCGAGCCCAAGGCCGGGTGGCAGGTCCTGGTGGA 95389 30 100.0 36 .............................. CCCAAGAGGAGAGCACGGACGTAGGCGGAGTCGGTG 95323 30 100.0 37 .............................. CCTCCCCGCGGGGAGGTGAGGGCGCGTGGGTAGACCA 95256 30 100.0 35 .............................. CCCCCCCGGTTCCCCCCCCGTGTCCGACTTATGGA 95191 30 100.0 38 .............................. CTCCTTCACCAGGTTGCGCTCAAGAGTTTTGAGGCGGG 95123 30 100.0 35 .............................. CATGCACGCACGGGCTGAACACATAGGGGTAAACT 95058 30 100.0 36 .............................. GTTCCCCAGCGTTTTTGGGAAAATCAGCCCGAATGC 94992 30 100.0 35 .............................. GATGGCCTCGTACTGGGGGGGCTCGAGGTGTTCTA 94927 30 100.0 38 .............................. TAAACCCCGCCGTCCACACCTCACTGAAGAAAACCCGG 94859 29 93.3 0 ........................-..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.5 36 GTTTCAAACCCTCATAGGTACGGTGCAAAC # Left flank : CTGGGAAGCCAGAAGGGCAGGCGGGCCCCCAGGGCCAGGTTCTCCGCCACCGTGTGGGCCTCCACCAGCTCGGGGTGCTGGGGGACGAGGGCCAGGCCGAGCTCCTGCGCCTTTCGGGGAGAGGAGATGCGGACGGGGTGGCCGTCCACCTCAATCTCTCCCCCATCAGGGGTGTAGAACCCGTACAGGATGTTGACCAAGGTGGTCTTGCCCGCCCCGTTCTCCCCCAAGAGGGCGTGGACCTCCCCGTAGCGGACCCAGAGGTCCACCCCCTTGAGGGCCCGAACCTCCCCGAAGCGCTTTTCCAGGCCGTGAACGCGTATTCCCATGGCGTTTTCCAAAAGACCGGCGGGCTCAGACGGGTTCTAACCCGCCCCCATAGGACCCGGGCTGGATGGCCCACAAGGGCACGCAAACCCCCCTTGCGGCCACCCGGGCGGCCCAGGCCCAGTCTACATACTTCCAGGCCCCAGGCCAAGGGCCATGTCTGTGCCTGTTTC # Right flank : TTGACCGCTATGACGCATAAAGCCCCAGGAACCTGAGGGCGGAGAGGGGATGGAAGGAGAAAGCCTCTAGGGCCGCCTTCTTTTGCCTAATCCCCTCCCGGTGCAACAGCGACACCAGAAAGGCCCGAAGCACCGCCAACACCTGTGCCCCCACCCTGCGCACCTGGCAGGCATCTTCCTTGAAGAGCACGTCCCGCACCCAGAAGGAACCGTTCTCTATCCCCCACCGGGCTACCAGCAACTCCCCAAGCCGCCTCGCATCCGCCACCTCCGGCCCCAAACTCGTCAGGGCATGGCTCAGCGTCCTCCGCACCTCCCCCGTCCCCTTGTGCACCACCACCCGCTCCAACCGCACCACCTGCCTCGCCCCGGGAAAGGCCCGTATCTCCTCCGGCAAGTGGGGAGAAGCCCACACCCGATAGGTCCATACCTCTCCATCCCCCCCCCCCCGCCACTCAGCTTCTGTCTCCCCGGGAAGGCGCTTCTCTTCCATCCCCTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCCTCATAGGTACGGTGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //