Array 1 6586-6404 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJWX01000351.1 Amycolatopsis rhizosphaerae strain TBRC 6029 NODE_351_length_7519_cov_4.4076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6585 36 83.8 34 .A...C..-A.C.G....................... TGGCGGGTCACCATCGGCCACCTCCCGCCCGCTG 6515 37 100.0 38 ..................................... CTCATCGTCTGCAGCCACGCCGAAGTGTGCTCGGTCCT 6440 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 94.6 36 GCAGCGCTGGCTCTCCGGAGCCAGCGAGGATCGCAAC # Left flank : TGGCTTCCTCATCGGTGAGGCAGATTCACTCGATCCTGAACGGAGTTCTCAGCGCTGCCGTGCGGTGGGAATGGATCAGCTCCAACCCCGCGAAAGTCGCGCAGCGCCCGCGGCAGACCCCGCCACAACCCAATCCCCCCCACATCAGCACAGGCGGCAAAGCTCGTCGAAAAGGCGTTCTCGCTGGACGAGGATTGGGGCACACTCGTCTGGCTCGCCATGACCACGGGCATGCAGCGTGGCGAAATCTGCGCCCTCCGCTGGGCGCGTATCGACCTGGACAAAGGCATCCTCGAAGTCCGCAAGAGCTACACCACGCTGCGCGGCGTCGGCCGGGAAAAGGACACCAAGACCCACCAGATGCGGCGCATCGCTCTCGACACCGAGACCACCGTCCTGCTCCGCGAGTACAAGAAGCGCTGTCAGGCTGTTTTCAAAGAGCCCGGCCGGGAGTGGGACGAAGAGTCGTACGTCTTCACCGGCTCAGGCCGCAACATCTT # Right flank : GTGGTCATGCCGGGCAGCGTCCGCAGGTCGCGTGGACGATGACCCACCCGCGATGGTGGCAGCAGGGCAGGGAGGTGTGGTTGCCATTGTGGTGTTTGGGGTTGTGCCGGTGGGTCCATAAATCAGGTCCCGGCGCTGGGCCAGGCGATGTCGTCAACGGTGAGGAACGGTTCGCCGGTCATGGTCGCGGGGGTTGCCCCGGTGAACGCCATGACGTCCCGATGCAGGTGGGACTGGTCGGCGTAGCCGGCGTTGGCCGCGACTTGGGCCGCGCTTTCGCCCGCGACCAAGCGATGGGCGGCATGATCGAAGCGGACCAGCCGCACGGCGCGCTTGGGCGGCAGACCGAGTTGCAACCGGAACCGGGACCACAGCCGCTTACGGCTCCATCCGACCTCGGCCGCGAGTCCGTCGACCCGGGCCAGGCCACGGCTGCCGACGATCCGGTGCCAAGCCCAGGCCACCTCCGGGTCCACCGGCGGCCCCGCCTCGTGCCGGCG # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCTCTCCGGAGCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.30,-17.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 584-1163 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJWX01000409.1 Amycolatopsis rhizosphaerae strain TBRC 6029 NODE_409_length_6364_cov_4.76367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 584 30 96.7 31 .............................C CGACTGGCTTCGTGCGGGCCTTGAGCAGCCA 645 30 96.7 31 .............................A CGCGGCTGGCGCTGGCCAAGCGGCTGCAGTC 706 30 100.0 31 .............................. CGCAGGAGATCGTGGTCGGGTCAGCGTCGTG 767 28 90.0 31 ................--...........A TCGGCCGGTTCGGGGTGGCGTTGACGCCGCA 826 30 90.0 31 .............A..............TG GATCGGTGAACGGGAATAGCGGGCACCGGAA 887 30 90.0 32 .............A..............GG TGACGTGCTCGGCAACGATCACGCCCTGCATC 949 30 93.3 31 .............A..............G. GGACCCGGCAGCCTTCCGGACGGTGGGTGGG 1010 30 93.3 32 .............A..........T..... TCGACCAGGTCAACAAGAAGCCGTGGAAGCCG 1072 30 83.3 30 ..........T..A..........T..TG. GCGGGGCGCGGCCGCCTGGGGAGGGGTGGC 1132 30 80.0 0 .........A...AT......AC......G | G,A [1134,1157] ========== ====== ====== ====== ============================== ================================ ================== 10 30 91.3 31 GTCTTCCCCGCGCGCGCGGGGGTGGTCCCT # Left flank : TCCGCCGTGATAGCCAGATGAAACCAGTACCCGCCGACAAAACCGCGGAGGGGGCCAGAAATACTCGACGGTAACCTTCGTCTCGTTCAGGTTGATGGTTCAGCTTCGTTGTTTCCCCTGTTGTCTGACCATGTCCTGTTGCTTCCTGATCTGCCGTTGCCTCGGTTCGGAAACCTAACTGGGTGGGGCTGAGAACGGTACAACCGCGCGCACAATCGGTTAACCTGGACGAAAGGTAAGACTGACTTCTCGCCGTCGGATCGCCTCCCAGCCAACACGCCGATGTACGGGCATCGATTTGCCCTGAAGTAGCCCGACGGCCTCCGAGAAACCACAGAGGCGCGAAGCGCTCGTCACATGCGCAGCGACCGTGACGGGTCGTCCAGGTGATGGCGCACAGGCTCCCCGTGTTCGCTCGGCGAGGCTCTGCCGACGCGGCCTACGCGCACAAACCGATTCTGTTTTCGCTTCCGACTCTGTATATTCCCAGGTCACGAAGT # Right flank : GGCGGTCGGACCTTTGTCTCGCTCGCCCTTCCGACAGCCGCAAGACAGAACCAGCCCGATCCGTACTCGCCACCAGTCTGGGGCATCGGACGGATACGTGACTGCTAATAGCTAAGGCTGGACCCGACGCCGGTGTCCTCTCCGGCGTCTTCGAGGCCGTCATAGCGGTGTTTCTCCTCGGCCGCCTCAGGAGCCCGCTCGTCCGTCGTTTCGTCGGCGTGGTCGGCAGCCAGTTCTTCGAGCTCTGCCCTGTAGTCCTCGTCGCGTTCTATGACCCCGTCGCGCAGCGCCTCGATGCTTTCCTGGTTGCGCGAGAACTGGTCGCTGGGTGCGGTCACGATGGGCCTCCACTTTTCGGTGATATGTTTCCAGGCGTGTGCCCGCGGGCTGCTTCCGCCGGGTTTGGGCCCGATAGGCACGGCCGGGCTTGTGGTCTGGATGTTGTAGGTCTCGCGGTAGGCCGCAGCTGTCGCGGCGAGTTCGTCCCATTGTTGGGCCGC # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGCGCGGGGGTGGTCCCT # Alternate repeat : GTCTTCCCCGCGCGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2467-1646 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJWX01000464.1 Amycolatopsis rhizosphaerae strain TBRC 6029 NODE_464_length_5633_cov_4.68398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2466 30 93.3 31 ............................GC GCTGGCGAAAGCAGCCAATGACCTGTCGGTG 2405 30 93.3 31 ............................GT GACCCAGCTCCGCGCCGCCGGAATCGTGGTC 2344 30 100.0 31 .............................. CCGCCTTGGCCGCGATCCGCGCCGAAGCAGC 2283 30 96.7 31 ............................G. ACGTGCGCACCGTCGGCAAAAACGGCTGGAT 2222 30 93.3 31 ..................A..........T CGACGTTCACGCTCGACCCTGGGGTGTGGAC 2161 30 100.0 31 .............................. CCACCGGGAAACCGGAGATGATGCTGCCCCC 2100 30 100.0 31 .............................. ACCCGGACGAGGTCCAGTGGCGGCTGCGCTA 2039 30 93.3 31 ..G..........................C GCACCCGCGTGGCGCCGGGCGGCAGGGTGAA 1978 30 90.0 31 ..............A.............GT AGATGGGCGCCCGTGGACCCCACTGGCGCGG 1917 30 96.7 31 ..............A............... TCGGACTGACCCGCCATGTCGGCCGCCGCCT 1856 30 90.0 31 .........................C..GC TGATGCGCACGGTCGCCGGCCTCAAGGTGAA 1795 30 90.0 31 ..............A.............GA CCCAGTAGATCCCGGCGTGCTGGATGGTGAT 1734 29 86.7 30 .............CT......-......G. CGCGATCAGCGTGGTGCCCCGGGTTATCCC 1675 30 70.0 0 ...C....G....CT.T.......TG.GT. | ========== ====== ====== ====== ============================== =============================== ================== 14 30 92.4 31 GTCTTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GAGCCCGGTGAGGCGCGGGAGCAGCCGTGGCAGCCATCCGGGTTGTTGGTAGCTGTCGCAGGTCGTGGCGAGGTGGACCAGTTCAGGCGTCGGGTGTTGCGGAAGTCGCTGCTGTGGCGGCCTAGGTAGCCGGAACCCGAGACGGAATATTTAGCGTGCGCGGGGAAGACAGCCCTGCCGGTGGCCGACATGAGTGCCGGACCAGCCCCGCGTGCGCCGGGAAGGATGAGCCAGGGACGCTTACGTTCGGGCGACTCAGGGGACCACCCCCGCTCCGCGGGGTCTTCCTCGCGGAGCGGATCTTCGCGATCACGGTCACTCCCGCGTGCGCAGGGAAGACGTCTTGAGGCAGTCGGCCTGCGTGTTCGCTTTCATGCGGTCGCGTGTGGCCCGGCGGGTTTCCGACGTAAGGTTGAAAAGAGCTGTCTCAGGAAAGAGCTCTCAGCGTGCAAGTTGATGCTGTTTCGGACTCCAGGTCTGTATATTCCCAGTTCAGCAAG # Right flank : CTCTGCTGGCGTCGCTGTTCCGGTTTGTCCGAGGACAGCCGAGCCCGTTCTATTGCACATGGGCGCGTGGGGGTGTATCACGCGCGCATGTTGCGCGCGCAACGTCGCGCGCGTTCGTGCGCCCGCGCGCATGTACGTACAAGAGCCAATGCCCGTGCCTGCCTTCGTGCGTGGGCAGGCACGGGTCTGGCGGTCAGATGGTCCAGCCGGTGAGGCGGAGCAGGTGGGTGTACTCAGCGTTGTCGAAGGCCAGGCCTACGGCGTCGCCGCGGATGCGTTCGATCTCGCGGGCGGGGAAGCCTTGATCCCGTGCGTCGCTGAAGGCGGCGGCGAGTTCGGCTTGGCGGGTTTCGACGAGACGGTGGGCGGCCGCCACAGCGCGCAACTGGTTGATCAGACTCAGTCGCAGCGCCTTTCGGACGGATTCGGGCATGCAGACTCCCTCCGCCGGTACCGGAGCGACTGGTAGCAGGCTGCGCCTGTGCGTCGTCGGGAGAACC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTCTTCCCCGCGCAAGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5110-5294 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJWX01000161.1 Amycolatopsis rhizosphaerae strain TBRC 6029 NODE_161_length_13753_cov_5.63988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5110 36 100.0 37 .................................... TTGGGGTGAGGAAAACGGCGCCGAGGTAGCTGCCGCC 5183 36 100.0 40 .................................... CCTGGGCCTGCGCGATGACCGGAACCTGGTAGTTGTACCA 5259 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 39 GCCGCAATGGAGTCCGGCGGAAGCCGCCGGAGACAG # Left flank : CATGGACGACTTCGAGACCGCGGCCGTTGACATCGTGCGAGCCGACGTGGTGGGCATCTGTGAGCTGACCGAGCCCGATGAGCGGGACTTCCTGCAGAGCCTCGCCAGCGCGGGTCAGTTTGCTCGATCGACGCACCGCATCGTGCGGTCGTACCTGGCCGAACTGTGCAAGGCAATGGACCACGAGGGGATTCGGTTGCCGACTGCCGTCCTCCGGTGAGCGCCTGACAAACGCGGCTGGGCGCGCATGGCCCCTGCAGCCGCGTCCAGCCGTGACCGCCGCGCGCGACCGGTCGGGCGACCGGCAGGCTTGCGCAGCCAGCTCAAGACGGGATGTTCACAGCAGAGCTGGTGCGAGGCCCTTGGGACAGTATCCGCTTGTCCCAAGGGCCTCGCGTCTTCCAGCTCAAATCGCTTCGATGACGCTGCCCGCCCGCGTCCGAGGGAAGCCGCCGGAGACAGAACACCGGCCTGGGCGCGTTGACCGACACCGCGTACCT # Right flank : GGGCTCGCGAAATTCGTGGCCGCTGACCTGGGATTTTACCGCATGTTGCCTTCAATTCGCCGTCGTCCGGCAACGGCACAGAGCCGGATCCCTCGTCCGCCCTCGGGTGAGCTTGCTGTCCCAGCCCGGTGTCTTCGTTGTCGGCGAATCGTGCTTCAACCCATTCAAGATAGAACAACCGAGGACAGTAAACCAATTCGTTCACCATTCTCGCTGGCAGCGGGTCTTCTCCCACGGTGACCTCATCTCGGTATGAACAGTCCAAGGCCGAAGTGACTCAGGTGACCGAGAGGCAGCGGGCCAGCTACCTCGCGGTTCAGCCGCACGGAGACGAAAGCGGAGGGGCGAACGCGCTCCGGGGAGGACGGCCGATTTCGGCGGAAGAACCTCGGATCATCTGACACGCGCAGTTCTGCGACTTCGACGCCCAGGCCTCGGTAGCTGAGTTCACGTTCTAGTTCGCTGCGGAGGAACTCGTGCCAGTCGCGCTTCTTCCGGTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGTCCGGCGGAAGCCGCCGGAGACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 272-974 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJWX01000007.1 Amycolatopsis rhizosphaerae strain TBRC 6029 NODE_7_length_45601_cov_5.22175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 272 28 100.0 33 ............................ CTGGACAGCCCGGTCGTGCTGGCAGTGGGATGC 333 28 100.0 33 ............................ CACCCGCAGACGAAGCAGCCTCTTTAGCACCGG 394 28 100.0 34 ............................ GGCCCACGACCAGGTCGCGAACGCCGCGTACGCG 456 28 100.0 33 ............................ GAACTTCTGGTCGTGCGAGACACACTCGGACAG 517 28 100.0 33 ............................ CCGGCCCGGGGGGTCGCTTCGCGTTTGGGTCGC 578 28 100.0 33 ............................ TTGAACCCTGTGCGACCTTGCGTGCGATCGCTG 639 28 96.4 33 ..................A......... GGTGTCGTCATCGAGCAAGTCGAAAGCCGCGGC 700 28 96.4 33 ..................A......... GCGCTGGCCGCCGCCTTCAACGTCAGCACTCGG 761 28 100.0 34 ............................ GCCCGCCCCGCGGGGAGAACCCAACCTCCATGGG 823 28 100.0 34 ............................ CGCGGAAGCCGCGCTCTTGGCTCAGGCCACTCCG 885 28 100.0 34 ............................ GCAGGCGAGGCAGGCCAGCGACCCGGCGGCGTGC 947 28 96.4 0 ........................G... | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.1 33 ATCTTCCCCGCGCACGCGGGGGTGCTCC # Left flank : GGGCAATAAAACGGACAAGAAGCCCATAACAGTCCGAGCTGTCCGCTACGACGGACACCTCATCATCACCGACCGCGACGCCTTCACCGCCGCCCTGCAAACCGGTATCGGACCAGCGAAGGCCTACGGCTGCGGCCTACTCACCCTCGCCCCACCCCGAACCACATGACAGCAGCCGACTCCCACCCACTGCGCATGCGACGATCGTGGGTACTGACAGAAACCGATTGAAAAACCCGGATGCTCGCGGAAAACGCCCAGGTCAACAAGTA # Right flank : CAAGCAGCTCGGAGCGGCGCAAAGGGACATCCCCGCCGCATCCTTGGCCCCCAGCATGCGGACTCGTCCTCCTCGCCCTCCCGAAGCGGCCATCTCCGCCGAAATGCCCCATGTTCGTACACAGCTCAGGCGCACGCTTGCTACAAGCAGGTCATCGCGCTGGAACAAAGTCTCGCAGGTAGATTGGGAGATCAACTGCCCTCAGGCGGTGACCCTCAAGCTGCGACGCCACAGCGGGCGGATTGTCCCAGCGGTTCGCTGCAAGGCCAGCGGCGAATGCGATGACTGCATCCTTGATCCGTTGCAGGCCACTTTCATCGAGTACCTTCATTCCGGGAGTTGCCGCAGCATCGTCGTGCATTCTGTGTGCCTTGTGAACCATCACGGGTGCGGCCGCAACGAGGTCGCCGTATCGCTCGCGGAACCAGTTCATGTGCCCAGACAACTGGTCGGCACAGTCCTTATGGATCCGTTGTGTGTTCGAGCCGCTTTTAGCCTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCCCCGCGCACGCGGGGGTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 32221-33230 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJWX01000007.1 Amycolatopsis rhizosphaerae strain TBRC 6029 NODE_7_length_45601_cov_5.22175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 32221 30 96.7 31 .............................C TGATCGGATGCACGCTGACGGGAGTTCGATT 32282 30 93.3 31 ............................CT GGGGCGACAGCGGATACGGCAGCGTCGAGGA 32343 30 100.0 31 .............................. CCATATACGCCAGCTCCTCCGGCGTCCTGGT 32404 30 96.7 32 .............................C TCCGGACGTTGGCCCGTCTCGTGCGGCCCGGA 32466 30 96.7 32 .............................T ACGACGCCGGCAAGGCGGCTGTGGCCTACCAG 32528 30 93.3 31 ............................CC ACTCCGGTGACTCGGACTCGACCGGTTCGAT 32589 30 96.7 31 .............................T CGCCCTCGTCGCCCTCGGCAGGCCCGCTTTC 32650 30 96.7 31 ............................T. CTGCGATAGCCCCTGGGACGAATACGGTGGT 32711 30 100.0 31 .............................. ACCCGACTGTGTTTGTGGTCGGGGGCGCCGT 32772 30 96.7 31 ............................C. CGATGCCGCCGGAGCGGGTGCGGACCACTTC 32833 30 93.3 32 ............................CC TTTCGTACTTTTTCGCGTTGTACCGCATAAGC 32895 30 96.7 32 ............................C. ACTACGACCGGCGCTTCAAGCGCGGCACGATG 32957 30 100.0 31 .............................. AATTCCGCGCCGGTGGCGGGAAAATTCGTGA 33018 30 100.0 31 .............................. AATTCCGCGCCGGTGGCGGGAAAATTCGTGA 33079 30 93.3 31 ............................CA TCGAGAAAGCCCACGAGTTGGGCATCCCGCT 33140 30 93.3 31 ............................CT CCACGACCATCTTGTGGATCTCGCGGCGCTC 33201 30 93.3 0 ............................CA | ========== ====== ====== ====== ============================== ================================ ================== 17 30 96.3 31 GTCTTCCCCGCGCCCGCGGGGGTGGTCCGG # Left flank : ACCATGATCGGTCAACTCGACCGGCTCCTCGCCGTCATGTCCCTGCCGCAGGTCACGCTCGGCATCATTCCGAGCCGGGCCGTATACGAGGCGCCAACTAATCAGTTCATCATCTTCGACAACCGCCTCGTCCACGTCGAGACGGTCTCGGCCGAGCTGAGCATCAGCCAGTCCCGAGAAGTCGCGCTCTACGCCAAGGCCTTCCAGCGGCTTGCCCAACAAGCAGTCACCGGCTCAGCAGCGCGAACCCTCATCACCACGACCCTTGACCAGCTCCGCACAGGGCAGAACGATGACGAGGAACCACCTGCGTGACGAAGCCGGCTTCCAAGTCCACGACCACGACTGGGGTCCCCACCGATTTCGAAGGCATCAACCTCATGCTCCGCCGCGACAACACCAGCAAGGCACCCGAAGCGACCAGCCACGGCAACCGCTAACCTCGCACCAAAGTGAATCTAAAACGCCCGCACCCGCCGCAAAGTCGCTGGTCAACAAGT # Right flank : ACGCTCCCCGGCCCGCTTCGGTGAAGTGCTTCGTCTTCCCCGCGCCCGACCGTCCCGGCGTGCCGGCTGTGATCACCGAGGGGCGGAACTCGGCTAACCAGTACCCACCCGGCGACGTGGTGCGCGTGCTTGCCCCACCGTCGAGATCGGCTGCGGCCCGGCCCGAGGTACCCGGCAGGTTCGGCTGAGCATAGGCAAGAAGTCACGGCTTTCCACGAGCGCATCGTCGTGAAATGCGCTGCTGATCTCGGCAAGCGCGGCAGCGCTACGGCCGCGCGAACTCTCCGTCCATGACGCCACCCGCGAAGGCGTCCCACTCTCCCGCCGTGAAGACGAGCACTGGCCCTTCGCCCTGCTGCTTGCTGTCGCGCAGGGCCACACGGCCGTCCTTCAAGAAGGCCACCTCGACACAGTTCGCCTGCCCGTTGCTGCGGCTGCTCTTGCGCCACTGCACTCCGGTCAGATCGGCACTCATCATGACCCGAACTCCCTTGCTGCTT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCCGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //