Array 1 75940-77392 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQDT01000158.1 Escherichia coli strain NOR76 NODE_1298_length_86624_cov_56.215462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 75940 29 96.6 40 ............................N NNNNNNNNNTATCAGTAACAACCTGGTAAATATCGGTTTT 76009 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 76070 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 76131 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 76192 29 93.1 37 ...........................NN NNNNNNNNTCGGGGCCATAAATGGCGCTCATTTATGT 76258 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 76319 29 100.0 32 ............................. GATACTTTATTAGCGAAAGTAATCCTAGCTCT 76380 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 76441 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 76502 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 76563 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 76624 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 76685 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 76746 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 76807 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 76868 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 76929 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 76990 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 77051 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 77112 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 77173 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 77234 29 96.6 40 ............................N NNNNNNNNNATGGGAGTCCAGATTACAAATTCCAGAATGG 77303 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 77364 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ======================================== ================== 24 29 98.9 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16576-16970 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQDT01000145.1 Escherichia coli strain NOR76 NODE_1115_length_115515_cov_52.051975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16576 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 16637 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 16698 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 16759 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 16820 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 16881 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 16942 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GNNNNNNNNNNCTCTGTTTTTGCGACAAGCGCAAGGTATCGTGTTCCCCGCGTCAGCGGGGATAAACNNNNNNNNNNTCAACTGGCACCACAGGATGATGGCGGCGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGCGCTCGACGCGGCACGCAGTCGGGCACAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCGACCGACTGGAGGCGGAGATTGTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTTGTTTTTCTGCCGGATTAACGCGGTGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTCGGGCTTGTTCGGCGCGGGTTGTTAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCGAAGGACTTGCTCGTGTGGTTAAAGCCGTGTTCCCCGCGTCAGCGGGGATAAACCGNNNNNNNNNNACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17078-17350 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQDT01000145.1 Escherichia coli strain NOR76 NODE_1115_length_115515_cov_52.051975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17078 29 100.0 32 ............................. CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 17139 29 100.0 32 ............................. CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 17200 29 100.0 32 ............................. TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 17261 29 100.0 32 ............................. TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 17322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCCCCGCGTCAGCGGGGATAAACCGTTTATGTGGAGTATCAGTGCCTGGGTGGAAAGGTGTTCCCCGCGTCAGCGGGGATAAACCGATAAAACAACAGGTGAGTTGGGTTTTGAGTATGTGTTCCCCGCGTCAGCGGGGATAAACCGTCGGCTCGTAGAAATGCAGATTCGCCGGATTAGTGTTCCCCGCGTCAGCGGGGATAAACCGATTTTCGCAGCGGGTAACCGCGCCCGGCGATCGTGTTCCCCGCGTCAGCGGGGATAAACCGACAATCAGATCACGATCGATGCCTCGCGTGAGGTGTTCCCCGCGTCAGCGGGGATAAACCGTGGGGCTGAGCATGGCTAAACAACCGAGGCGCGTGTTCCCCGCGTCAGCGGGGATAAACCGNNNNNNNNNNCTCTGTTTTTGCGACAAGCGCAAGGTATCGTGTTCCCCGCGTCAGCGGGGATAAACNNNNNNNNNNTCAACTGGCACCACAGGATGATGGCGGCGAA # Right flank : GCCAGCGAAGGACTTGCTCGTGTGGTTAAAGCCGTGTTCCCCGCGTCAGCGGGGATAAACCGNNNNNNNNNNACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //