Array 1 522-1745 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADZ01000005.1 Neisseria meningitidis strain Neisseria meningitidis isolate R814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 522 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 588 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 654 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 720 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 786 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 852 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 918 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 984 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1050 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1116 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1182 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1248 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1314 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1380 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1446 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 1512 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 1578 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 1644 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 1710 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //