Array 1 19700-18081 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANSA01000020.1 Neisseria meningitidis 97020 NM97020.contig.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19699 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 19633 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 19567 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 19501 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 19435 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 19369 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 19303 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 19237 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 19171 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 19105 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 19039 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 18973 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 18907 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 18841 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 18775 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 18709 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 18643 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 18578 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 18512 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 18446 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 18380 36 100.0 30 .................................... TTCTTCAAATTCCTTAGACGCAATTAATGC 18314 36 100.0 30 .................................... GAATCTTTAAAGGCAGATTCGGGATTTCCC 18248 36 100.0 30 .................................... TGATGCGGCGATACAGCGAGCCAGTTGCAT 18182 36 100.0 30 .................................... CGGCAACCGTGCCGGCATCAAACATCAGCG 18116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //