Array 1 4204692-4205940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083263.1 Escherichia coli strain JNU chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4204692 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4204753 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 4204814 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 4204875 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 4204936 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 4204997 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 4205058 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 4205119 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 4205180 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 4205241 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 4205302 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 4205363 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4205424 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 4205485 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 4205546 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4205607 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4205668 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 4205729 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4205790 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4205851 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4205912 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4221442-4222448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083263.1 Escherichia coli strain JNU chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4221442 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 4221503 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 4221565 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 4221626 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 4221687 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 4221749 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 4221810 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 4221871 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 4221932 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 4221993 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 4222054 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 4222115 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 4222176 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 4222237 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 4222298 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 4222359 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 4222420 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //