Array 1 71573-70613 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018050.1 Prevotella melaninogenica strain GAI 07411 chromosome II, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 71572 33 93.9 44 AC............................... TGAGTCAGAGTGAATAGGGCTGATGTTCGTGTTGTTGGAATGCT A [71570] 71494 33 100.0 37 ................................. AGAGGGCAACCCATCCCGGTTCGAGCCCGGGTCTGGG 71424 33 100.0 40 ................................. AGAGAAATCACGCTTCCTGGTTCTCGTAGTTCGTGACGAA 71351 33 100.0 37 ................................. AGAGTATTGAGAAAGACTTGATACTATTTATTTTATT 71281 33 100.0 37 ................................. AGAGTATTGAGAAAGACTTGATACTATTTATTTTATT 71211 33 100.0 37 ................................. AGAGTATTGAGAAAGACTTGATACTATTTATTTTATT 71141 33 100.0 37 ................................. AGAGTATTGAGAAAGACTTGATACTATTTATTTTATT 71071 33 100.0 38 ................................. AGAGTAGTGTAAAGATCGAAGATTCTCCTTATATCGAG 71000 33 100.0 38 ................................. TGAGACAACTACGTTAGTGTTTCGCTCAGTCTTGACAA 70929 33 100.0 37 ................................. TGAGGTGAAGGACTTTTCAGAGTCCAAACCCTATGTT 70859 33 100.0 41 ................................. TGAGTTTTATAAAAATATAAAATATACAATATGAGACATAA 70785 33 100.0 37 ................................. TGAGGAAACTAAGTTTATTTATGTTTCTCTGTTTAGT 70715 33 100.0 37 ................................. TGAGAGTATATTTATGCATTTTAATCGTTACTATATT 70645 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================================ ================== 14 33 99.6 38 GTCTTAATCCTTGTTTTAATGGAAGATACTCTC # Left flank : TCACTGATGAGCTTTAATGTAAGCATAACGTTCTAATCTTTATTTTAATTTGTTTCTGAGAGCAAAGTTACGAAAAAACTTCTATAAGTCAAAAACATTTATATTACTTATTTTGTTATTTACTTGTAAGAATGGAGGGGGTAATTGGTTCTGTTTATGAAGCAAGTATTTACGAAAAATAATGCCATTATAAATGCTTTGCGTGTTTATAATTTTGCTATTTCCCAAATATGGAGTGATAAAGTCTACTGAGTTAGAAGAAGATTTATGGTGATTTTTATGATAGTAATGTTGTTTTTAATTTGCTGTCACTTTTAACATTTCTCACAAACCTCCTATTAATCAAGTGTTTGTATGCCTATGTGGGCTGAAAGGAGTGACAGGAAATTCAGTTTAAGAAATAGCTTGTATAATCTTATTAAGTCAGGAGAGCCTATGATATAGGTGAACTTTGTTATTTCTTAATGTCGGGGGAATCTTAGTTATAGTACTATTAAATT # Right flank : TGAGAGCAAAGACTTATGTTCCTTTGTGTACGAGTATTTGGGGTATGTTCAAGCTTTTAGAAACGCTTTTATTAACATAAATTAACCCATTTATTTGCGGGTGCAAAGTTACAAATAATTTTTAAGATGTCAAAGATCACTGCGTTAAATATTCTTTAGGAAATAATGTATTCTCTTTTGCTAAAAGAGTTTTGTTAGTTCTATCTCTTAGAAGAATAATGTGTTACGCGAACGAGTTATAATGTCTATACTTATATCTTCACCGATAATTTTCATTGCTTGTAATTGATCAGTGGAGACGGGGCATACGATGATGCTGTCATGATTGTCATAGAGCGACTGTACTTCTTCAAGGTCGCTTTTGATTAAGTCATAGACTTTCTTATTGAGGTCGGCAAGGAAGATAGAACGCTGTATGCGAGTACATCCTTTGCGTTCCAGATATTTTGCAATATGATAGCGCACCTTGTCGCTTTCTATATCATACATAACGAAGAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 325279-324024 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018050.1 Prevotella melaninogenica strain GAI 07411 chromosome II, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 325278 37 100.0 36 ..................................... GTACATCTTTTCGCCGTATAGCCTTTTTACGTCGCA 325205 37 100.0 35 ..................................... ACACTACAACCTGCATAAATATCATCAATATCTCC 325133 37 100.0 35 ..................................... ACCAAATACCATGAATACATCACCCTTCTCGAGAG 325061 37 100.0 35 ..................................... CCATTGATAGAGTCATCATCACCGTCCTTTGCTTT 324989 37 100.0 34 ..................................... TGCCCGAGTTTTTTTTTGATGTTCATCGGTACAT 324918 37 100.0 35 ..................................... TATATACTAACCACATAAAACTAATAAATATAAAA 324846 37 100.0 39 ..................................... AGTGCCATTCTAAATCTTATTGAAGTTTTAACAGTGGAG 324770 37 100.0 31 ..................................... TCTTTTGCTTCTTCCTCCCACATATCACCTT 324702 37 97.3 35 .......G............................. GCAATGTGAACAACACACACATTATCACGCACTGA 324630 37 97.3 33 .......G............................. TCACTCTTCTTGTAGACTGGTAAGGAGTTACTA 324560 37 97.3 36 .....................G............... CCATAATCAACCAGTTAGCATCAATATTATCAAAAC 324487 37 94.6 34 .......G.............G............... TTATTATAATTATTTCTAACATAGCTTTTTTTAT 324416 37 94.6 34 .......G.............G............... TTATTATAATTATTTCTAACATAGCTTTTTTTAT 324345 37 94.6 34 .......G.............G............... CTTATATTCGTCAATCTTCATTGTTGGTATTCAA 324274 37 97.3 37 .....................G............... TGCTTGTTTAATTCGTTTCTTGTAGTCTTCGTTTGCT 324200 37 94.6 33 ..........C..........G............... TCTTTAAAGTACTTAGATATGTTGTCAAGTGCA 324130 37 100.0 34 ..................................... TGCAAAAGTCCTTTTGTGTTATTGCTAAATTCTC 324059 36 89.2 0 .......C.......................-...TA | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.6 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : CTGATTCGTGAGACGGAAGCCACGATTACCTGTGTGGGTTTTATGGGGGGCGATGCCGACCCTGCTGAAGTTGACAGACTCGCTGAATACGTAAGATGTCATCATGCTGGACTAAAAATCGGGTGGTACACTGGGCGCACAGCTATCTCTCCGCTCATTGACCAACAGCGTTTCGACTATATCAAAGTGGGACCTTATCTCCGCCATCTCGGTGCCCTCGACTCTCCTCGCACCAATCAGCGAATGTACCGCCGCAGTCCCGATGGCAGCTTTGAGGATATCACCTCCCACTTTTGGAAAGCCCATGAAGACAAGAACTTATAAAAAAGTAGTCTTTGCTTAATAAGATTTAACCCTGCGTTCCTTGACTTTTTGTTTAAAAATCACTACCTTTGCACTCGCTTTTAAAGCAGTTAATTTCTATTAACAAAAGCCGATTTTATAGGTCTTACTATTATCAAAACCTCTGAACTCAAGGATTCTTAGGTTTTGCTCTCTGA # Right flank : GAGGTGGCAAGTTAGAGAAATATAGTAATTCTTTAAGCATAGTACTTCTTCCTCTTTTAGCAGTATTCTCACTTTAGGAAAGGTCAGTCATAAAGTAGTATGTAAGAAAAAAGCCTGCAGCTCTTTGCTTTGGGATCATTATCTTTGTAATTGCGTTTACGGCTACTCCTCGTAATGGTGGGCGTGTTTTATAAGTCATTGTAAGTCATTGAGTAACTAAACAATGATAAAGAAGTTTAAGGCAATCATCATGGTGCAATTGTAATATATGCACAGCGTTCTCTAAGTGTAACGAATGATTTAAGGTTTTTCCTGCTCTTATGTGTGCTTAATCTGCATAGACAAGTTGAACTAAAATAAGTTTGCTGTCATTCCTGTCACCTTTAACGAATGCTTATATAATTGATTTACAATGAGTTTTCTCAAAATGTTAAAAGTGACAGCAAATGAAAACAAACTTATTGTAGTATATATTTAACCCAAATCGGTCATTAGACCAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 627112-627930 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018050.1 Prevotella melaninogenica strain GAI 07411 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 627112 37 100.0 34 ..................................... ATTAAATCTGACAATTGCATAGTGTTATTTATTT 627183 37 100.0 36 ..................................... TTATTAAGATTACAATAGTTAACTACATTAGCAATA 627256 37 100.0 38 ..................................... TCCGCCCTTACAATAGAATAGTAATAAAAGCCGTTGCC 627331 37 100.0 34 ..................................... CATTTTAATTGCAATTTTATTGGGTTACCGAAAT 627402 37 100.0 34 ..................................... CATTTTAATTGCAATTTTATTGGGTTACCGAAAT 627473 37 100.0 33 ..................................... GACATACACTTACAGTTCGGATCATGTACAATA 627543 37 100.0 33 ..................................... ATTTTTAGTTTGTTAATAATTGGTTAAAATTGT 627613 37 97.3 33 .....................C............... GACATACACTTACAGTTCGGATCATGTACAATA 627683 37 100.0 33 ..................................... ATTTTTAGTTTGTTAATAATTGGTTAAAATTGT 627753 37 94.6 33 .......C.............C............... AACAGTCCACTGTCAGACACACGAAATACGAAT 627823 37 94.6 34 .......C.............C............... AAACGAACGTAATTCTCTTTAGGAGTAACAGTTA 627894 37 83.8 0 ........T...........T........G.A..T.G | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 97.5 34 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : TCTGCACTGATTCATGGTGCGAAAGATACCATTGCCTATGTGGGTTTTATGGGTGGCGATGGTGACCCAGCGGCAGTCGACCTGCTTGCGAAATATGTCCAAGAACGTCACAACGGTTTGAAGGTTGGTTGGTATACTGGGCGCACGGCAATCTCTCCGCTCATCAATCAACAGCATTTCGACTATATCAAAGTGGGACCCTACCTCCGCCATCTTGGTGGACTTGATTCCCCACGCACCAATCAACGAATGTACCACCGCTGCACAGATGGAAACTTTGAGGATATCACTTCCCGCTTTTGGACACATCAGATAGGCAATAACCTATAAAAAAGTCACCTTTGGTTGATAAGATTTAACCCAGCGTTCCTTGACATTTTGCTTAAAAATTACTACCTTTGCACTCGCTTAGAAAGCAGTTGATTTCTGTTAACAAGAGCAGGCGTTATTGGTCTTATAAATACCAATCCAGCTTATACAAAGGATTCGTATGTCTTGCT # Right flank : GAGCTGGCAAAGTTAAGGTGGATTATTGTTTAGTATTTTTAAGCATAGTACTTCTACCTTTTTTAATAGTATTCTCACTTTAGGAAAGGTCAGACAGAGAGTAGCTTATAAGAAAAAAGTCTGCTCCGCTTGACATTCTGCTTTAGAATCATTACCTTTGCAATCGATTTACGGCTACTCCTAAGTAACGGAAAATGTATTTTTAGAGTCCTTGTAAGTCAAAGAATAACAGAATAATAATGAAAAAGTTTAAGACAATAATCATGTTGCTATTGGTTGCTATTGCGTTGTATGCGCAGCGAACTCCAAGAGTGACGAATGATCTTAAAGAAGGAGACTTAATCTTTCAAGTATCGCAAAGTCGTCAGTCACCTTTTATTCAATTAGCAACTAATTCTCCGTGGTCACATTGTGGTGTGATTGTAGAAAAGGAGGGAAAACTCTATGTGCTTGAAGCTTCTAATGTTGTCAAGGTCACTCCACTAAAAGCGTGGATTGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 960040-958225 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018050.1 Prevotella melaninogenica strain GAI 07411 chromosome II, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 960039 47 100.0 30 ............................................... TAATTCACTCAAGCACCGCTATCAGTACCT 959962 47 100.0 30 ............................................... TTATCAGCAGTAGCAACAACTTCACTAATA 959885 47 100.0 30 ............................................... AGATGCTGGTATTAATCCTTATATTGCTGC 959808 47 100.0 30 ............................................... GGAGTGTATGTCCGAGCTCGTCCTTAAGAG 959731 47 100.0 30 ............................................... AAAACATCTTTAGGTACTAAAAGAGAAAGT 959654 47 100.0 30 ............................................... ACGCTCTTGTTAAATTGCCTGTTGAACAAG 959577 47 100.0 30 ............................................... AGCAAACCGATAGTTTTGTTCCTATTACAA 959500 47 100.0 30 ............................................... CTGCTGTAGCTGGTGACCATTTCTATATAA 959423 47 100.0 30 ............................................... ACTTAATCACAATGAGGACAAAGGAGTATT 959346 47 100.0 30 ............................................... CAGACATGATTAAAGTGTGACGAGTTGTCT 959269 47 100.0 30 ............................................... GAGATATGATAGATGTAGTAAGTTATGCAA 959192 47 100.0 30 ............................................... TAAGGATTGGTTAACTGGCATGAAACCAAC 959115 47 100.0 30 ............................................... TGATTCTTTAGAATACAATAAAGTTCGTCC 959038 47 100.0 30 ............................................... GTGACTTCCTTACTGGCTTAGGGCAAAATG 958961 47 100.0 30 ............................................... GCCGTGAACTAAATTGTACCGCTGACTATT 958884 47 100.0 30 ............................................... CTTTTTCTTTGTGTCTTATAAGTCGCTTTG 958807 47 100.0 30 ............................................... GCACGCATATTTTGTTCAGAATAACCACGC 958730 47 100.0 30 ............................................... GGCTGCCTGTTCTCTCTTTTGCCTCTTAAA 958653 47 100.0 30 ............................................... GCCTATCAGTATTAACGGCTCAGATGCTCA 958576 47 100.0 30 ............................................... GTTTACTTTGCAAATGTGCTATAAAAGGGG 958499 47 100.0 30 ............................................... TTCAGACGCTAAAACAGCTGCTAATCGTGC 958422 47 100.0 30 ............................................... ACGTAGATTAAGGTTTGCAGTCAATTCGCC 958345 47 100.0 29 ............................................... ACGAGTGGAAACAGAAGGCGAACAATATC 958269 45 87.2 0 ................................TTT-.....-....T | ========== ====== ====== ====== =============================================== ============================== ================== 24 47 99.5 30 GTTGTTTTAGATACCACAAAGGTACTGATTTTCAAGCAAATCACAAC # Left flank : ATTATGTGGATTCTTGTATTCTTTGATCTACCAACAGAAACCAAGAAGGAGAAGAAAGCATATAGCGATTTCCGGAAATCCCTTATAAAGGATGGATTTACTATGTTCCAGTTTTCCATCTATGTACGCCATTGCGCAAGTATGGAAAATGCAGAGGTACATATAAAACGAGTTCGAACCATGTTACCAAAGTTAGGGAAAGTAGGAATACTCTGTATAACAGATAAACAATTTGCAAACATTCAACTCTACTATGGCGAAAAAGAACAAACTCCTAACGCACCTGGACAACAATTAGAACTTTTTTAAACTTTATACCCTAACAATTAAAAACAAGCTTTCAATGTCCTCTTAAACAACTTAAAAACTTATCCTTCTCAGCATAGTCATTAAAGTAAAAAATCCCATTCTAAACGAATGGGATTTCACTTTGTAGTATCAATTTATTTTCGAATAACAACCTTATATCTTGCTATTAGCCAATAAATTATACAACTTCT # Right flank : AGAGAAACATACTGATGAAGGGGAAAAGAGGGTATATAATAGATACCACAAACATGGTATTTTCAGGTAATTAGTACTTAAAAAAGTATGAAAAGTAAGGATTGTGAAGATTTATTTGGAATAAATACAAAATAATTCTTTGCAGTTTGAAGATAAATATATATCTTTGCCGACAAATCCAAACATAAGGATAAAAATAGGTTAAAGGAATAGGATAAGACTAAACTTAATCTATAAATTGCTGGGTAAAACCCACAAACACAAATATAAATTCAAGACATAAAGTCAATAAAAAACAGATTATGAACAAAGTAAAATTATTATTAGATTTCGTTCTTAACACCGCAGCATCGCTGAAGGGTACAGGTATTCATTTGATACGTATTGCCATCTTTATCATCTTCGTATGGATTGGTGGTTTGAAGTTCTGGAACTATGAGGCAGAGGGTATTGTACCTTTCGTTGCTAACAGTCCTTTTATGAGTTTCTTCTATTCAAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTAGATACCACAAAGGTACTGATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //