Array 1 25606-24855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYMH01000018.1 Enterobacter roggenkampii strain MNCRE16 CRE16_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25605 28 100.0 32 ............................ CATTCGCCGGGTCATGCTCCGTCGCGCTCAAT 25545 28 100.0 32 ............................ GGCAGGGGAGTATCTATCCTTTAGGATTATGA 25485 28 100.0 32 ............................ CATAGCCGCAGCCGCAGCGATGCGCCGTTCGG 25425 28 96.4 32 ...................T........ TCCAGCCCGCGCCAGTCCTCACACCTCCTGTG 25365 28 100.0 32 ............................ CATATCCCCGGCAATGGCCGACACTGCCGACG 25305 28 100.0 32 ............................ GAGTGATTGTCTGCACCTGGGTGAAGTACTTC 25245 28 100.0 32 ............................ AGGTGGGGTGGCAGAACATGGACACCCCGAGT 25185 28 100.0 32 ............................ CCGGCCCGGACCACCTCCCTGCAGAGCCCTGA 25125 28 100.0 33 ............................ TGGAGCCTTACGGGTTCACCAGTGCCCCGCTGG 25064 28 100.0 33 ............................ ATTCGACACCGCGATAGAGCGTGCCAGAAAGAA 25003 28 100.0 32 ............................ TGGAGCGGCTGCGCACTGCTCGCCACTCTTTT 24943 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 24883 28 82.1 0 A...A......C...C......C..... | C [24858] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGTGGGGGATTAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATAGATTGATTTTAAATGATTATTTCTGGTGGATGAAAAAGAGGGTGAGAGAAGGATTTTTAGCTTTTTTTGTATGCAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : ATAGAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGTATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACAGGATAAACGTCAGGACGTTATCTGAAGCGAAGGTCCCAAACGGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35791-35102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYMH01000018.1 Enterobacter roggenkampii strain MNCRE16 CRE16_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35790 28 100.0 32 ............................ AGACTGGATGGACATAAGGCGGTATACGGCGA 35730 28 100.0 32 ............................ TTATGGAAATCTGTGCGTGGTAAATCCTTCGA 35670 28 100.0 32 ............................ AACCTGCATGAACAGATCACCGCCACCTTAGC 35610 28 100.0 32 ............................ TTTGAGGAAGTGCCGCAATGAAACGTTACACG 35550 28 100.0 32 ............................ GTAATAATTGACATTACCGATAAGAAAATAAA 35490 28 100.0 32 ............................ TACGGGAAATCGGCTCTTTATGCTTTACAAGC 35430 28 100.0 32 ............................ ACGTCGCTGGCTGGCTCGTTTGCTGGGGCTTT 35370 28 100.0 32 ............................ AAAAATTCCCCCGCCCGCTTATGTCGGAATTT 35310 28 100.0 32 ............................ AGTCGACGCGCTCGGACGTTGCCAGGGTGAAC 35250 28 100.0 33 ............................ TGACGGGAAATCACGAGGACTTTCCACAGGCAT 35189 28 100.0 32 ............................ GCGCAGATTGCCGCCCGTCTCGGACGAACAGT 35129 28 75.0 0 ...........C.....T...AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACTGCGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACTTATTAATTTATATGGTTCTAATTTACGTCCCAGAAAAAGGGTTTTATGCGAAAAAGTTGATTATTTTGTTTGCTAACAATAGGATGGCGTTGTTTCCTTTCA # Right flank : AAAACAACTCTCTATAACATTCAGCTTACCTATTTAAAATTTAATACTATCAAACCCACATTCTTTATTTTTCGCAATGAATAAAAAATTCATTCACATACCAATTATATTCCAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //