Array 1 655562-654600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026116.1 Latilactobacillus curvatus JCM 1096 = DSM 20019 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 655561 36 100.0 30 .................................... TCAGCCAGCCAGTTGATGCCTCTAGCCTTT 655495 36 100.0 30 .................................... GCTTGCAACTAACCACAAACCTATTATTCG 655429 36 100.0 30 .................................... AAAAGTCGCGATTTTAGGAGGATCATTCTA 655363 36 100.0 30 .................................... TCATCGACTGTCGAAACAATCAAACCATGT 655297 36 100.0 30 .................................... TCTAACCAACCGCCACCAAGAGTATGAACG 655231 36 100.0 30 .................................... TACTGGATTCCTTGGGAAGAATTAAAACGT 655165 36 100.0 30 .................................... AAAAATTACCCTTGATTTATCTGTCGATGA 655099 36 100.0 30 .................................... TGGTAAGCCAGTATTGTTAAGATATGATGG 655033 36 100.0 30 .................................... TAACCATTATCAGACAAGGCCAACAGCTGG 654967 36 100.0 30 .................................... ATGCTTTCCAAACCAACGTCGCCAGTTAGG 654901 36 100.0 30 .................................... TTATCCAGCAATGTTTGGCTATGGTGTTGT 654835 36 100.0 31 .................................... CCAATTACTTATACAAGTATTCAATGCCATC 654768 36 100.0 30 .................................... TGTTTAGATAGTAGTTTTGAATTTCATCGG 654702 36 100.0 30 .................................... CGCATTAACTGCTATGGGTGCTCTTAGCAT 654636 36 83.3 0 ........................A....T..TTTA | T [654604] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 98.9 30 GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Left flank : TGATATCTTTTCCAATGGTAATAGGTGCTGCGCGGTAATTTCAGTGCCGAAAGAATAATTGATAAGCGGTGTCGCAATAACTGATCTTCTATGAAGACAAGGCAATTAATTCGTCCTAATGCTTTCCCAGTAACACCGCCGCAGCTTTTAAAATTTCGAGTTCCTCCTTTAATCGCTGATTTTCCTTTTGAAGTTGTTTGAATTCTTTGGACGTTACTTCAGTACCGTCTTCTAGCTCAACTGATTTAGCGCCTTTAACCCAGTTATGAATTGCGGCTGGAGAAACACCGTATTCCTCGGAAAGCGAGCGAATAGATCTTTTCTCTTCACGATGCATCTTCACAATGCTGGCTTTAAAATCATCTTGATATCGTTTCATTGGAATGCTCCTATCTTGTTTTATTAATTATGGCACAACTGTTCAGAAATTTATGTACCAAATACTAGGATAGGAGCATGAGTAGTTCAACGATTTTCTTGAATCCTCAATATGTTTGCCT # Right flank : CCTATTTCCCCAGGAAAGCTATTGATAAAGATCACGTCGCCTGCGTGGTCTTTTTTCATGCATTCAAGCATTGAAAACAGTTCTCAATTAGCATAGAATTAAGAGCGTATAATAATTGCTAGAATGCGATTCTTGGAGGGTCATCTATGTCTAAATTAGAGATTATCGATTTGCACGTCGGCATCGACGGTAAGGAAATTTTAAAAGGTGTTAACCTGGAAATGAACACGGGTGAAATTCACGCGATCATGGGACCTAACGGGACTGGGAAGTCGACGCTTTCGGAAACGATTATGGGCAATCCCAAGTATGAGGTACTGCAAGGTCAGATCAAACTAGATGGCCAAAATATTTTAGAAATGCCGGTTGATGAACGCGCCCGCGCGGGGGTATTTTTGGCGATGCAATACCCTGCTGAAATTCAAGGGGTAACGAACGCTGAATTCATGCGCGCTGCGATTAATGCACGTCGGGCTGAAGATGATCAGATTTCAGTGATG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 656770-657734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026116.1 Latilactobacillus curvatus JCM 1096 = DSM 20019 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 656770 35 94.4 30 A.....-............................. GAGCCATCTGCAAACTCGCCTGCTTTTTCA C,GGAG,A [656774,656779,656784] 656841 36 100.0 30 .................................... AAACTACCTAACTCAAAGGAAAAAGAAAAA 656907 36 100.0 30 .................................... TTTGTAAAGATGATTCGTTGAGTGTAATAA 656973 36 100.0 30 .................................... CGCTACCGACTCTTCAACCTGTCTTTGTGT 657039 36 100.0 30 .................................... ACTAATCCCTTATCCCAACTATCATATTCC 657105 36 100.0 30 .................................... AATTTGAAAGTGCGAAGAAAACAGCGGAAT 657171 36 100.0 30 .................................... GTACAGTCAATCAGACTAGCAGTACAGTCA 657237 36 100.0 30 .................................... AATGAAGGTGTACCAAATGACAAATCTTCA 657303 36 100.0 30 .................................... CTGCTGGAGCAATGGCATTTTTAACCGTGT 657369 36 100.0 30 .................................... ATGGTAAAAGCAGTTAATGAGCATATTAAG 657435 36 100.0 30 .................................... TGACGCTTTGTTTGCTGGTATTGGTTACAC 657501 36 100.0 30 .................................... AAACGGGTAACGCCACCCAGTCTGCTAAAG 657567 36 100.0 30 .................................... CCATAGCCGGTTGCTGTCGACATACACCTT 657633 36 100.0 30 .................................... GCACCAGCAATCAATACCAGCTATAAGGAT 657699 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.6 30 GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC # Left flank : CATGTGGATCATTCACAACGCCCCAATTTAATCAAGCACCAGCCCAATGCAAGGATATGGCGTGCTGACATTACTTATTTGGAATTACGTCCAGGAACCTGGGTTTATCTCAGTTCTATTTACGAACCAAAGGTTCATCAAGTTCTTGCTTTCAAGATTGGTCGTCAGATGGAGGCGACGTTAGTTGTAGAAACGATTAATCAGGCGCTTGAATATCATCAAAAGCCACAATATTTTCACTCTGACATGGGTTCACAGTACACCAGCAACGAAGTTGAAACTTTACTTGAACGGCATCAGATTAGCCACTCATACTCAAAACAAGGTTATCCTTATGATAATGGGCCAATTGAAGCTTTTCACTCATTGTTGAAGAGAGAGTTTGCCTTTCAAACAACTTTTTCCAATTTTGAGGACTTGGTAATCCGAACCTCAAATTACATCAGTTGGTTTAATTCCGACAGAATTAGAACGAGTGTTTAGAAAAAGATGTGCCATTT # Right flank : CCATCGTTTTTTCATCAGAATTTCATTTTATTCATAGCGCCATTCGACATAATCATTATCGATGTGATAATAATAACATTTCTGGTACTGATCAGATTTAACCTCTTCTGAAAATTCAATGAGAAAGAGTTTCACATTCAATGTCGCCACCAACCTCACCAATTCATTAAATTGGTTGATACTGAGATAGTGCGAAACGTTGATCAACGTGATTATTTTTGATTCATTTAACTCTACTGCTGTCTGTACTATACTCTCAATTATACCATATGGGTCATGTTGGACGACAGTCGAAAATTGTAAATTATAGAACTTAATCATTCTTTGAAGATCCCATTCCTGATTGACATCTAAGGTCAATTCATACATAAAGGCCGCATCCAAAATCGTTAAACGAATCTCACTATCTAACTGAGTTAATTTCTGGCGCTGCTGATCCGTTAAGTCGGCGGCGAATTTTTTAATCAACCGATTTTGAAATAGATGATTCAAATTAATTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTACTCATTGATTTGATACTCTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //