Array 1 49043-48835 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYX01000003.1 Acinetobacter haemolyticus CIP 64.3 = MTCC 9819 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49042 28 100.0 32 ............................ CAACACATACTCATCAAGAATTACTTTTAATT 48982 28 100.0 32 ............................ AGTACCCGAACAACACACGATCACATTATCGG 48922 28 100.0 32 ............................ TAACTTTGTAGCTGTATCTGTAGCCATTGTTG 48862 28 85.7 0 ........A.............C.T..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGTAAATGCGATTTGTCTTTGTAGATTACTCACCTCAATTGTATCTGCATCCACGATCGTTATTTTGCCTACACCTGCACGAGCAAGTAACTCTGCACTTGTACAGCCGATCCCTCCAGCACCAACAATCAGTACATTTGCCAATTTTAATTTTTCTTGTGCTTCAATATCCCAACCATCTAATAAAATCTGACGACTATATAAATGCATTTCGTCATCAGTTAATTCAAAAGTATGTTCTAGATGATCAGACACGTTCCATGATCTCAAAATCGGCTTAACGAATGCTGATTTTAAGTGGCTAATCTCATTTAGCAAAGCATTTAATGCTTGCTGCATCATTTATTTTGACAAATCAACGGATTTACCCCAATATTTTTATTACTCTTTAACAGCTTAATAAAATCAATACCTTATGAATCAGCATAAAAACTTTGGGTGTTGAAGTATTTTTCAACCCAAGCTAATGTTTTTTCTTAATTTATTTATGCTATTTTATT # Right flank : ACAATCAAAAACAACCCACAGTACCTAGTGAAATTAATGACTTATATCGCTTTTAAATAAACAATTTGTTAAATTATATAAATAGAATATAAGAGATTTATCATGGAAAAAACTCTATTAAAGTTCATCTGTCTTATAACATTGTTAGTTTCAACAAATCCAAATATATATGCAAATGTTTACATACCAATTCCCTCATTAAAAAAGCCTAAAATATCTCCGCATATTAAAGCTCAAGCACTCAAAACGGATGAGTTTGATGTATCTACCAAACAATTATTAGAAAAAGGCTATATTCCTATTAAATCCCAAACATTTAATGGTAGAGATGATTTTAGAGGTTATGAGCACGTTGTAGCAGCGCTAGAAAAAAGAGCTGATCAAATGGGAGCTCAAATTGTACTATTTACTAATGAGAAGCCAACAGGAAGTGTAGATTATTATAGTTTCACCACTCCCTTTCCTCAAAAATCAACAATACAATCTAACTTTGATAATTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3473-4883 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYX01000065.1 Acinetobacter haemolyticus CIP 64.3 = MTCC 9819 contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3473 30 93.3 30 ............................AA GATTAGAATAAGCATCAAGCCGACTAATGA 3533 30 96.7 30 .............................C AAGTAATAACTTAACACCCTCAACAGCTGC 3593 30 100.0 30 .............................. CTCGTCATGAAGGTTTTGGAGAAATGCTTT 3653 30 93.3 30 ............................AG AAAGCGTGGACTCCCCGAAAGTCGAATTTT 3713 30 96.7 30 .............................C TTAGGGCATCAAATAAGCTATGAGTTGCTT 3773 30 93.3 31 ............................GA ACGATCCAAACAATAACAATCCTAACAATCC 3834 30 96.7 30 .............................G CACCAATTGCACCTGCACCGATTGCTGTGT 3894 30 93.3 30 ............................AC CATATATGCCTAAAGAGCATTTACACCTAG 3954 30 93.3 30 ............................AA TCAAAAATCTATGATCAATGCACCAGTCGG 4014 30 96.7 30 .............................A CCCGCAAAAAAAATTTGTTATATGCTTATT 4074 30 100.0 30 .............................. CATTCGATCTAATATCGGGTCAAAAGCTAC 4134 30 100.0 30 .............................. GAGGAGTCTGTCTCCAGTCACAATCTTTCG 4194 30 100.0 30 .............................. TCGACGGAGTTAGAAGTTAAATTTCTTAAA 4254 30 93.3 30 ............................GA CAGAAAGAAATCGCGAATTAATTTCTGGAT 4314 30 93.3 30 ............................GC GAGTTTATTAACCGCGATGAAGCTGGCCGA 4374 30 96.7 30 .............................G TTTAATGCGGGTCTCTTGCCAGTTTAGCGG 4434 30 96.7 30 ............................A. CATCAATAGGAGATTTTAAAATGGCTAATA 4494 30 93.3 30 ............................AC AGATACGCACCAACTTTGAAAAAGTTTGCT 4554 30 96.7 30 ............................G. TAATTTATTAGATCAGCAACTAAAACAAGA 4614 30 96.7 30 T............................. AACTACACGTTCAGTCATGGCAGCCACCTA 4674 30 96.7 30 ............................A. TACCATCACTGCCACCAGTGCCGTTGCCGA 4734 30 100.0 30 .............................. TGAACGACAAATAGAAATCTTTCATGTGAT 4794 30 90.0 30 ........................T...CA TCATAATGACAGAAGGCGAGTCACGGCGAG 4854 30 83.3 0 ........T.A.............A.T.G. | ========== ====== ====== ====== ============================== =============================== ================== 24 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTCAGTGGCTAGAACGATTGATGGATTATGTGCACATCATTCAGCCGCGTGAAGTGCCGCAAGCCAAGGTTACTGGTCATGCACACTATTATCGAGTCAATCCGAAGATGAGTATAGAGGAACGCATTGCTCATCAAGCACAGCGTCATAATATTCCTTTGGCTGAAGCTAAGCAGCATTTTAAACAATATGTTGAGCAACCTGTGGTTGAGCCTTATGTTAGTTTAAAAAGTCTGAGTGCTAAACGTGAGGAAAATATAGATCGACCGTATCGCTTATATATTGGTAAGTCTGTTGCTGATGAGGCGAAAGATGGGAAATTTGGAACGTATGGGCTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTTATTCTTTAACAGCTTAATAAAATCAATAAGTTACAATAAGTCGTTTTTTGATTGGGTAAATTGCTAAAACCTATGATAAGTACTTGTTGTAACTCATATTTTTACTATAATTTTATA # Right flank : TGTAAATGGTTATTCCTAATACATTCAGGCACTTTAATTTTTAAATAAGAAAATATACCCTGAACCTAATATATTTTTAGTGAATTTTTCATGCGCGGTCTTTATCTCATCACCAATGATGATCCCATCCAATTATTACTTGAAAAATTAGAAGTTGCTTTAGCGACGAGAAAGGTTGCGATTTTGCAATATCGCCGTAAGAAAGTGGCAAAGGCAGATCAACCACGTGAAGTTGAACAGATCAAAACATTGTGTGAAAAGTACCAAGTACCTTTTGTCATCAATGATGATTTGGCTTTAGCTGAACAATTTGGATTAGGTGTCCATTTGGGGCAGTCTGATGGGGAAATAAGCGATGCTGCTGCACGTTTGCCGCAAGGTGTGATTATTGGTCGTACATGCTTAAATTCACTCGAATTAGCTGAAAAAGCAATTGCTGATGGGGCGACTTATGTTGCTTTTGGTGCAGTCTATGCCACCTCAACTAAACCTGAAGCAGG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //