Array 1 1620305-1620809 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073875.1 Saccharibacillus sacchari DSM 19268 SacsacDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1620305 33 100.0 35 ................................. AAAGCCAAGAATCCATTGAAGACTGGACTTACCCT 1620373 33 100.0 35 ................................. TGTCGAAAAAGAGGCCGTCCACAAGCTCATGTGTA 1620441 33 100.0 34 ................................. TCTGAGCAAACTCGCGAACCGCGTCCGTCATACA 1620508 33 100.0 34 ................................. GCCCTGGTGTTCGGTAACGACTATGTAGCATTGA 1620575 33 100.0 34 ................................. AAAATAATTCGGAACAATCTTTTGGCAAATATTT 1620642 33 90.9 34 ...........CAC................... AGCTCAAGAACGTCGCTCATTGCGTATTCAAATT 1620709 33 93.9 35 ............AC................... GGGTCAACGACGCTTTTAATCGCATTGTCGAAAGA 1620777 33 93.9 0 ............AC................... | ========== ====== ====== ====== ================================= =================================== ================== 8 33 97.3 35 GTCGCTCTCCGTGTGGAGGGCGTGGATTGAAAC # Left flank : GCACGAACCCGGCTCCACCTCCCGTCGCCTGACCGAGCATTGGGCGCAAGAAATCGGCCTGACCTTCTCTTCCGCGATGGAGCTTGGAGCGATCGAGACGATCAAAGAGACGCTGCGCTGCAACGACAGCGTAGCCGTCCTCCCTCTCCGCAGCGTGCTTCGCGAAACGGCGAACGGCGAGCTGATCCGCCGCCCGCTTCCCGGCTACGTGAATCGTAGACGGATTTGTTTGGCTTACCGGGACGAACCGATTTATTCCGCCCCGGTGCGGGAGTTTATCGGATATGTAAAAGGATTAGCCGAGGAATAGAAGCCTAAACCCGTGTTGAAAAGCGCGAACCTGAAGCTCCCATGAAATCCCCAGTAGGTTCGCACCCCGCATGGCATAAGGCTTTTAGCCCTGTAACTTGTGTTTTTGTCCAGTTTTGGATACGCTAATTTCGAGCTTCGCACTTTTGACCTTTGAAAGCCTTGCGGGGCAAGGGGTAAAAGTGGGTGCA # Right flank : CATACTCGTTGTTGTCGCCTTCGTGCCTGATTGTGTCGCTCTCCGTGCGGAGGGCGACACAATCAGGCACGCCAATCTCTAACGGATCGTCATTCCTTTAGAACCCCATTTTCGCCTCCCTCAAAGTTTTAACGGATTCTACTGCCGCTTAGACGGAAAAAAGACGTTTTTAACACGTAAAAACTCGATTTTCAGCGGCTAAGCTTCACCTCGATCCGTTAGAATTCTGAAACTCCAAATTCAAGCCTTTAAGCGTCGCTACGATCCGTTAAACGTCGCAAACGTGGCTCCACGCGGTTAACAAACTTCCAGCTCTGAAATCACCAAAACACTCGCGCTCTCGATCCACTTCATACAAAGAAAAGCAGGTTGATTTCCTCTAACACAAGGAAATCAACCTGCTTTTCTCAATCCCTTCAACCCGCTTAACCAAGAAGCCCTATTTGCTTCCTTGAAATTCCGCCCTTGTAAAGGCTCCAGGCAGAGAGAGAAATTCAGTG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGTGGAGGGCGTGGATTGAAAC # Alternate repeat : GTCGCTCTCCGTACGGAGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3474785-3475082 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073875.1 Saccharibacillus sacchari DSM 19268 SacsacDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3474785 32 100.0 34 ................................ GGATCACTAACATGACGATAATACGTTGCTTTAG 3474851 32 96.9 35 ....................A........... AAATGGAGAGCTTGTGTCGATCAAAGGTAGATACG 3474918 32 100.0 36 ................................ GCCAGCATGAATTCGTGTTCGGGATGCTGGTACATC 3474986 32 90.6 33 .........A.T.......T............ CATTAAAGGATAAAGCTTATTTGTCTTGCTTGG 3475051 32 78.1 0 ...A.....T.T..AA......A...C..... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 93.1 35 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : CGGCAGTCATCAGCCTGATGGATCAAGGCTACTTCCCGGCAGACAAGCTGGTCACAAAACGGATCGGGTTGGATGAAGTGCTGAGCGAAGGATTTGAGACGCTGTTGAAAGAGAAGAATCAGGTGAAGATTCTGGTTAAGGCAGAGTAAATGGTAGTGGGCGTCTATTCGTTTTAATAAGCCACCAGTGAAACGATTCTTACTTCGAGCAAAGGCCCCACCTTGTCTGGAAGTATAGAAGCAATAGCTGGCAAACTAATCCCGGAAACGTTAGAGACGTTTCCGGGATTTTTATTGTGAATGCAAATAGGGAATGAATGTGAGCTTACAAAAGTGCGAACCTGAAGCTCACATAAAATCCTCGGAAGGTTCGCACCCCTTATGACATAAGGGATTTGAGAGATTTTATTGTGTTTTTGTCTGCTTTTCGCTAGTCTAAATTTGAGGTTCGCACTTTTGCCCCCTTAAAGCCTCGCTGGGAAAGGGCTGAAAGTGGGTACA # Right flank : CCAGTCCTTAAATTTGAATTCTTTACATCCCCAAACCACGGCATCTTCCCGTGGTTTCAACGTGTCTATTAAAGTCTAACGTAGCTAGAAGCGAGGAGACGGAGAGAGAAATTCAGTGAAGGAGCGATAGCGATCGCCTTTGAAATCGAGAAAAAACCAATATAAGTTTCAATCCATTTTCTCGATTTCAACACGCGACCGGAACGAATTTCTCTCGCAGTCTTCTCGCTTCCCACGTACACAGGACTTTCAAAGACAGCCCAGAACCACGGTATCTGACCGTGGTCAGAATGTCGAGAAACCCAGCTCTCCTCATAGAGAGTTGGGTTTCTTTTGCGTCTCGTGACTCTTTTTTCCTCGGCCGGCAGGCCAAGCAGGCCGGTTAGGCCTGTTTGGCCTGCCGGTCCAGGTGGTTCGCCACCTTCTTCATGTTCTGCACGGCGGCGGTCAGGAGTGCCTGCTCCGTCACATTCGCAAGTCCGCGCAACCTGAAATAACGA # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4570277-4572367 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK073875.1 Saccharibacillus sacchari DSM 19268 SacsacDRAFT_Scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4570277 32 100.0 33 ................................ CTTGTGCCATTCCTTTATCGAGATAAGTTCCTC 4570342 32 100.0 35 ................................ TGGCAGGGCTGTGATTTTCGTGTAGCCCCCAGCGG 4570409 32 100.0 34 ................................ TGACATGAAATTTGATTGTTCAAATGATCGGTTG 4570475 32 100.0 35 ................................ TCCTCGGCGATGTCGACCGAGATGTAGATGCCGAC 4570542 32 100.0 36 ................................ GATTCTCCGTACCAACGGATTGTGACGTAGCCCCGG 4570610 32 100.0 33 ................................ TGGCTAATCTCTTCGATTTCGTTGTCTGGTGCG 4570675 32 100.0 34 ................................ CAGATCCGAAGCAAGTTCATTTCGATCGCGTTCA 4570741 32 100.0 36 ................................ TACAAGTGGAAGCGTGAAAAGCCTGAATTGGTGGAA 4570809 32 100.0 33 ................................ GTGAGCGCGGCGATCGTGCCCGCCTCCATATCC 4570874 32 100.0 35 ................................ GAAGCTAGCCTGACCAGCCTGCTTATTGTTATCGC 4570941 32 100.0 34 ................................ GCAGCTTTCGAACGGGGCGGTCGGGTCGGCTGCT 4571007 32 100.0 33 ................................ CGTACAAACCGTACTTATTAAAAACAGAGTCAG 4571072 32 100.0 34 ................................ AGTTGAACGATACGAACACCAGTACAGCAACAGA 4571138 32 100.0 33 ................................ ACCATCCACCTTCACAGACGATGTAGCGCGATC 4571203 32 100.0 33 ................................ CTCTGGTACGAGAAGGAATATAGGCAGCAAGTA 4571268 32 100.0 35 ................................ CGTCTGAATTGGCCGACGTGATTATTCGGCTTGCC 4571335 32 100.0 34 ................................ AACGTCACCCAAAAACTCATCCCACCATTTACAA 4571401 32 100.0 35 ................................ CTCCGGAGTATCGAAATATCCGGAACAGCGGTCAA 4571468 32 100.0 34 ................................ GTGCTGTTTTCGTTGCGCTGAACCTTTCGATCCT 4571534 32 100.0 35 ................................ CTGAACTTTCGCTTCTTTTACCGCCGCTTGTCTCG 4571601 32 100.0 35 ................................ ACGTCCCAGCTTGTTTGTATTGTGTGATCCTGTGA 4571668 32 100.0 36 ................................ TCTGCGTAGATCCAACCAACCTGACCGGAATCCCAT 4571736 32 100.0 34 ................................ ATGGAAGTCGACACGCCAGTCGTATTCGCCGGAG 4571802 32 100.0 34 ................................ GCAAGCGCAGTTAGTATCGGCTGAACCGAATTTA 4571868 32 100.0 34 ................................ ACAAAGACTTTGTTTGCCCGATCAATCGGCAGCG 4571934 32 100.0 34 ................................ AATCATTCCCTTGCTGCTTAAAGATGATGCGAAG 4572000 32 100.0 34 ................................ TTGCCGACGCTGCCACGCTACGAAATCACTTTCC 4572066 32 100.0 37 ................................ GCGCAGCCTCGGTGATCAAGCGACGGCGGCGTTGCGC 4572135 32 100.0 37 ................................ GGTAAAGATCCGTACATCATCATCAACGCCGGGTATA 4572204 32 100.0 35 ................................ GTGGTAGTTCACGAACTTGTTGAATTGCTTCAGGA 4572271 32 96.9 33 ..........T..................... CATCAAGCGAAGCCCAATTTGTGCCGAGCCGTG 4572336 32 81.2 0 .....C.A.....TA.......A.T....... | ========== ====== ====== ====== ================================ ===================================== ================== 32 32 99.3 34 GTCGCTCCTTACGCGGGAGCGTGGATTGAAAC # Left flank : GCGAGTATCAATTAACCGACGCCCTGCATGCTTCATGTGCCGAGGATGGTTTACTTGCTCTCGAACTGGCTGGCGATCGTTACGATATCGGCGATAAATTCGGCTATATGAAAGCGATCCTGGAGATCGGCCTGCGCCGCAAGGAACTGTCCCCGATGCTGCTGGATTACCTGCATGAATTGGTTTCACGACCGGAGTATGCTCGTGTACCTGCTTCTGGAGCAGGCGCGATTCGGCAGTCGGGCGATTGAAGTGCCTGATAACGGAATCGATTCGAATAAAGGCTGCGCTCCCTGTATAGGAGCAAGGCCTTTATTTGATAGAAGAAAAAAGTGCGAACCACAAGCTCCCATGAAATCCCCGGGAGGTTCGCCCCCCGCGCCACGTAAGGGATTCAAGGATTTCGGTTGTATTTTTGTCCAGGTTTCGGTAGTCTGAATTAGAGGTTCGCACTTTTCGGCCTGCGAAGCCTTGCAGGGCAAGGGCTGAGAGTCGGTGCA # Right flank : CTGGGATTCGAGTAAAGCGATCATTATGACGCTTGCGTCGTCTCTTAAATCTTCACGACTGGATCAATGCAAAAGATGGGCGTGTACTTTTCTCGAAAGAAAAGTACACGCCCATCTGCTTTATAAGACGTAATCTTATTATATCTGTTCGGCTCTTAACAAAAAAGTTAGCTTATCCATACCATTATCCATTCATTGCCCAACTCACAATCTCGTCATTCCGATCCAAATAAACCGTCGGGCTATATCCATCGAACAACGCTCCAGCTTCATCCTTTTCAACCAACCATAATTCCAGATCCCCGTAGTAACTAAAATTCACAGAATCCAAACGCAGCATGTCGCGGAAGGACTCCAACTCCAAAGACTCCTTCTCCTCTTCGCTACCGCTCTCCCACAAATAAGCCGTCGCAGCGCGCAGATACGAATCCAACCGCTGCAAACGAGGATTAACCGCAGGTAGCATCTCCGTCAGTTCATCGCGAGCGGTCGCCTCACAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //