Array 1 43211-44178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEWV010000005.1 Staphylococcus chromogenes strain SC16 NODE_5_length_202494_cov_156.497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43211 36 100.0 30 .................................... TATATACATTCAAGGTAACCAGCCAACTAA 43277 36 100.0 30 .................................... TTACATACATGGTTACTGATATGGGAGGGT 43343 36 100.0 30 .................................... AATAATACAAGTATTAATAGAGACAGAGAC 43409 36 100.0 30 .................................... AATTAAGAGAAAAATACGCCATCGAAATCG 43475 36 100.0 30 .................................... GTATTGTCAGACGGGAATACGTACCCGTTT 43541 36 100.0 30 .................................... AAAGTAGATAACGATGTGTTAGCGGCACTT 43607 36 100.0 30 .................................... ATTAGATCAGTGGTAAATTCCACTTTCTCT 43673 36 100.0 30 .................................... TTAAAAATGGCTACACGTATAAAGACGGTT 43739 36 100.0 30 .................................... ATTAGATCAGTGGTAAATTCCACTTTCTCT 43805 36 100.0 30 .................................... TTAAAAATGGCTACACGTATAAAGACGGTT 43871 36 100.0 31 .................................... TGACCTGTACCTTGTCTAACATCTGTACATT 43938 36 100.0 30 .................................... TGGACGTTTATCTTGCCTAGACTCAACCCC 44004 36 100.0 30 .................................... TCAGTTATGTTTAAATGCGCCATACAACTT 44070 36 100.0 31 .................................... CTTCATTTGGCTTGAATGATTGGATAACTAC 44137 36 94.4 0 ...........................T.......A | TTT,CA,C [44163,44170,44174] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.6 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTTCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG # Right flank : ATGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //