Array 1 17040-18072 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACSCN010000025.1 Staphylococcus aureus strain WH119 contig25, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	====================================	======================================	==================
     17040	    36	 100.0	    36	....................................	TCTATAAGTTCATTAATTCCGATACCTAGATTATCT  	
     17112	    36	 100.0	    34	....................................	TTTTTTCCACCCTTTCAGATCATCTATGATCTTG    	
     17182	    36	 100.0	    34	....................................	AATTTTCTAATTCTATAAGTTCATTAATTCCGAT    	
     17252	    36	 100.0	    36	....................................	TATACTATTTACATAATTTTTTATGTGTCTGTCTAC  	
     17324	    36	 100.0	    37	....................................	TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 	
     17397	    36	 100.0	    34	....................................	TAGAATGTTATTATCTAAGTGGTCGATGTATTCC    	
     17467	    36	 100.0	    38	....................................	TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC	
     17541	    36	 100.0	    35	....................................	TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT   	
     17612	    36	 100.0	    35	....................................	ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG   	
     17683	    36	 100.0	    36	....................................	ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA  	
     17755	    36	 100.0	    36	....................................	ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA  	
     17827	    36	 100.0	    35	....................................	AAGTTAACGGCATTACCTAATAAAAATATTTTAGG   	
     17898	    36	  97.2	    33	...................................C	TCATCTTTCATGTCACTGATTAATTCATTTGTA     	
     17967	    36	  97.2	    35	...................................C	GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT   	
     18038	    35	  91.7	     0	............T.................-...G.	|                                     	
==========	======	======	======	====================================	======================================	==================
        15	    36	  99.1	    35	GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	                                      	       

# Left flank :   TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT
# Right flank :  TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GATCGATAACTACCCCGAATAACAGGGGACGAGAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.80,-7.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//