Array 1 28042-26488 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAYN01000073.1 Lacticaseibacillus paracasei NRIC 1917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28041 36 100.0 30 .................................... TCCACACTTTGATTTTCATACTTACCTCCT 27975 36 100.0 30 .................................... TGATGAGGACAAGAAGAAGCAAGATGAAGC 27909 36 100.0 30 .................................... CTGCTGACAAAGATCAAGCTGTTGCACCCG 27843 36 100.0 30 .................................... ATACAGGGCTGGCGGACGCAACGGCATGAA 27777 36 100.0 30 .................................... AAGGTCGTCTGGTGTATCGCCACGCCAAGC 27711 36 100.0 30 .................................... AGGCATGAGTGAAGACTTCCATTACGCTTC 27645 36 100.0 30 .................................... ATCATGATGGCACACGGCGACACCGCATTG 27579 36 100.0 30 .................................... AGGCTTTACCTACGAATTCCACACCTTGTG 27513 36 100.0 30 .................................... CAACGGCTGCCAGTCCTGACAGCAAGCCCG 27447 36 100.0 30 .................................... GGATGCCACCCCGATGCTAGCCGATCACCT 27381 36 100.0 30 .................................... TGGCGATTTGATCGGGCATGTTGTCACGCG 27315 36 100.0 30 .................................... TAGCTTTATCAAGACCAACGCCACCAAGAA 27249 36 100.0 30 .................................... TATGATACTTTTCAGTTGTTGATCAACGGC 27183 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 27117 36 100.0 30 .................................... TTGACGGGGTCGAATTGCCAGAACCGTTTT 27051 36 100.0 30 .................................... TTGATTCGTACGCTGTGATTCAAAGTCTGC 26985 36 100.0 30 .................................... ACTTTGGTCTTTTGCAAAATCAGCACTTGC 26919 36 100.0 30 .................................... TGCATTTTTACTGTTTCATGTCGCAATCGG 26853 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 26787 36 100.0 30 .................................... ATTAGTCATCGTCAGTCACCTCTTCTTTCG 26721 36 97.2 30 .............A...................... TCTTATCCGTATCTGGCTCGCGTTTCACCT 26655 36 100.0 30 .................................... CACGGGGACTACATTATGGTTTCAGCGATT 26589 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 26523 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.2 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //