Array 1 161-1162 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CPIC01000012.1 Mycobacterium tuberculosis strain 0056M, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                            	Insertion/Deletion
==========	======	======	======	====================================	===========================================	==================
       161	    36	 100.0	    43	....................................	TCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA	
       240	    36	 100.0	    36	....................................	GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGG       	
       312	    36	 100.0	    35	....................................	GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT        	
       383	    36	 100.0	    43	....................................	TCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA	
       462	    36	 100.0	    36	....................................	CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG       	
       534	    36	  97.2	    37	......G.............................	TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA      	
       607	    36	 100.0	    38	....................................	ACGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGC     	
       681	    36	 100.0	    40	....................................	CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG   	
       757	    36	 100.0	    35	....................................	CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA        	
       828	    36	 100.0	    37	....................................	ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG      	
       901	    36	 100.0	    40	....................................	ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA   	
       977	    36	  97.2	    38	..................A.................	TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA     	
      1051	    36	 100.0	    40	....................................	GCGTATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT   	
      1127	    36	  97.2	     0	...C................................	|                                          	
==========	======	======	======	====================================	===========================================	==================
        14	    36	  99.4	    38	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                           	       

# Left flank :   CCGCCCGCTCACGCAGCTCCGGCGGGTACCTCCTCGATGAACCACCTGACATGACCCCATCCTTTCCAAGAACTGGAGTCTCCGGACATGCCGGGGCGGTTCAGAGAGGGGACGGAAACCTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGTG
# Right flank :  CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [12,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.70,-6.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [1.15,0   Confidence: HIGH] 

# Array family : NA
//