Array 1 8736-9495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQGZ010000026.1 Escherichia coli strain ARS-CC11210 NODE_26_length_73124_cov_24.775733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8736 29 100.0 32 ............................. AGATGAGGAGCTTAGAGGGACGCCGCGCAACA 8797 29 100.0 32 ............................. CGGCGTGACACACATAGTCATTGTGTACGCTG 8858 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 8919 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 8980 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9041 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9102 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9163 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9223 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9284 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9345 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9406 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9467 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97735-99349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQGZ010000016.1 Escherichia coli strain ARS-CC11210 NODE_16_length_99506_cov_21.831005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97735 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 97796 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 97857 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 97918 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 97979 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 98040 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 98101 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 98162 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 98223 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 98284 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 98345 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 98406 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 98467 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 98528 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 98589 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 98650 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 98711 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 98772 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 98833 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 98894 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 98955 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 99016 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 99077 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 99138 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 99199 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 99260 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 99321 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //