Array 1 172428-174531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOT01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172428 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 172489 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 172550 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 172611 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 172672 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 172733 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 172794 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 172855 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 172916 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 172977 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 173038 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 173099 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 173160 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 173221 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 173282 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 173343 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173404 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173465 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173526 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 173587 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 173648 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 173709 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 173771 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 173832 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 173893 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 173954 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 174015 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 174077 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 174138 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 174199 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 174260 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 174321 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 174382 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 174443 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 174504 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191039-193508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOT01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712400, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191039 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 191100 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 191161 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 191222 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 191283 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 191344 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 191405 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 191466 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 191527 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 191588 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 191649 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 191710 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 191771 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 191832 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 191893 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191954 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 192015 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 192076 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 192137 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 192198 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 192259 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 192320 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 192381 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 192442 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 192503 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192564 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192625 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 192686 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 192747 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 192808 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 192869 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 192930 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192991 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 193052 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 193113 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 193174 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 193235 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 193296 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 193357 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 193418 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 193479 29 93.1 0 A...........T................ | A [193505] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //